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Report for CCDS47098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47098.1 Public Homo sapiens 4 HERC6 24 110 108 CCDS HistoryNCBI Gene:55008Re-query CCDS DB by CCDS ID:47098.1Re-query CCDS DB by GeneID:55008See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264346.12 ENSP00000264346.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264346.12Link to Ensembl Protein Viewer:ENSP00000264346.8Re-query CCDS DB by Nucleotide ID:ENST00000264346Re-query CCDS DB by Protein ID:ENSP00000264346
Original member Current member NCBI NM_017912.4 NP_060382.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017912.4Link to Protein Sequence:NP_060382.3Re-query CCDS DB by Nucleotide ID:NM_017912Re-query CCDS DB by Protein ID:NP_060382Link to BLAST:NP_060382.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060382.3 1022 Q8IVU3-1 1022 100% 0 0

Chromosomal Locations for CCDS 47098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88378922 88379120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88383221 88383380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88385499 88385575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88390652 88390879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88393488 88393582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88396015 88396142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88396851 88396987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88398142 88398209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88404876 88404997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88405554 88405613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88408524 88408617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88413077 88413266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88417425 88417579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88423860 88423973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88424595 88424702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88428580 88428750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88431162 88431305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88435725 88435891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88436905 88436971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88437711 88437781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88439874 88440057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88440148 88440250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88442234 88442460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3069 nt):
ATGTACTTCTGTTGGGGCGCCGACTCCAGGGAGCTGCAGCGCCGGAGGACGGCGGGCAGCCCCGGGGCTG
AGCTACTGCAGGCGGCCAGCGGGGAGCGCCACTCTCTGCTGCTGCTGACCAACCACAGGGTCCTCTCGTG
CGGAGACAACAGCAGGGGTCAGCTGGGCCGCAGGGGCGCGCAGCGCGGGGAGCTGCCAGAACCAATTCAG
GCATTGGAAACCCTAATTGTTGATCTCGTGAGCTGCGGGAAGGAGCACTCCCTGGCTGTGTGCCACAAAG
GAAGGGTCTTCGCATGGGGAGCTGGTTCTGAAGGGCAGCTGGGGATTGGAGAATTCAAGGAAATAAGTTT
CACACCTAAGAAAATAATGACTCTGAATGATATAAAAATAATACAAGTTTCCTGTGGACACTACCACTCC
CTGGCATTATCAAAAGATAGCCAAGTGTTTTCGTGGGGAAAGAACAGCCATGGGCAGCTGGGCTTGGGGA
AGGAGTTCCCCTCCCAAGCCAGCCCGCAGAGGGTGAGGTCCCTGGAGGGGATCCCACTGGCTCAGGTGGC
TGCCGGAGGGGCTCACAGCTTTGCCCTGTCTCTCTGTGGGACTTCGTTTGGCTGGGGAAGTAACAGTGCC
GGGCAGCTGGCCCTCAGTGGGCGTAATGTCCCAGTGCAAAGCAACAAGCCTCTCTCAGTCGGTGCACTGA
AGAATCTAGGTGTGGTTTATATCAGCTGTGGTGATGCACACACTGCGGTGCTTACCCAGGACGGGAAAGT
GTTCACATTTGGAGACAATCGCTCTGGACAGCTGGGATACAGCCCCACTCCTGAGAAGAGAGGTCCACAA
CTTGTGGAAAGAATTGATGGCCTAGTTTCGCAGATAGATTGTGGAAGTTATCACACCCTGGCATATGTGC
ACACCACTGGTCAGGTGGTATCTTTTGGTCATGGACCAAGTGACACAAGCAAGCCAACTCATCCGGAGGC
CCTGACAGAGAACTTTGACATTAGCTGCCTGATTTCTGCTGAAGACTTCGTGGATGTTCAAGTCAAACAC
ATTTTTGCTGGAACATATGCCAACTTTGTGACAACTCATCAGGATACTAGTTCCACACGTGCTCCCGGGA
AAACCCTGCCAGAAATAAGCCGAATTAGCCAGTCCATGGCAGAAAAATGGATAGCAGTGAAAAGAAGAAG
TACTGAACATGAAATGGCTAAAAGTGAAATTAGAATGATATTTTCATCTCCTGCTTGTCTGACTGCAAGT
TTTTTAAAGAAAAGAGGAACTGGAGAAACGACTTCCATTGATGTGGACTTAGAAATGGCAAGAGATACCT
TCAAGAAGTTAACAAAAAAGGAATGGATTTCTTCCATGATAACTACGTGTCTCGAGGATGATCTGCTCAG
AGCTCTTCCATGCCATTCTCCACACCAAGAAGCTTTATCAGTTTTCCTCCTGCTCCCAGAATGTCCTGTG
ATGCATGATTCTAAGAACTGGAAGAACCTGGTGGTTCCATTTGCAAAGGCTGTGTGTGAAATGAGTAAAC
AATCTTTGCAAGTCCTAAAGAAGTGTTGGGCATTTTTGCAAGAATCTTCTCTGAATCCGCTGATCCAGAT
GCTTAAAGCAGCCATCATCTCTCAGCTGCTTCATCAGACTAAAACCGAACAGGATCACTGTAATGTTAAA
GCTCTTTTAGGAATGATGAAAGAACTGCATAAGGTAAACAAAGCTAACTGTCGACTACCAGAAAATACTT
TCAACATAAATGAACTCTCCAACTTATTAAACTTTTATATAGATAGAGGAAGACAGCTCTTTCGGGATAA
CCACCTGATACCTGCAGAAACCCCCAGTCCTGTTATTTTCAGTGATTTTCCATTTATCTTTAATTCGCTA
TCCAAAATTAAATTATTGCAAGCTGATTCACATATAAAGATGCAGATGTCAGAAAAGAAAGCATACATGC
TTATGCATGAAACAATTCTGCAAAAAAAGGATGAATTTCCTCCATCACCCAGATTTATACTTAGAGTCAG
ACGAAGTCGCCTGGTTAAAGATGCTCTGCGTCAATTAAGTCAAGCTGAAGCTACTGACTTCTGCAAAGTA
TTAGTGGTTGAATTTATTAATGAAATTTGTCCTGAGTCTGGAGGGGTTAGTTCAGAGTTCTTCCACTGTA
TGTTTGAAGAGATGACCAAGCCAGAATATGGAATGTTCATGTATCCTGAAATGGGTTCCTGCATGTGGTT
TCCTGCCAAGCCTAAACCTGAGAAGAAAAGATATTTCCTCTTTGGAATGCTGTGTGGACTCTCCTTATTC
AATTTAAATGTTGCTAACCTTCCTTTCCCACTGGCTCTGTATAAAAAACTTCTGGACCAAAAGCCATCAT
TGGAAGATTTAAAAGAACTCAGTCCTCGGTTGGGGAAGAGTTTGCAAGAAGTTCTAGATGATGCTGCTGA
TGACATTGGAGATGCGCTCTGCATACGCTTTTCTATACACTGGGACCAAAATGATGTTGACTTAATTCCA
AATGGGATCTCCATACCTGTGGACCAAACCAACAAGAGAGACTATGTTTCTAAGTATATTGATTACATTT
TCAACGTCTCTGTAAAAGCAGTTTATGAGGAATTTCAGAGAGGATTTTATAGAGTCTGTGAGAAGGAGAT
ACTTAGACATTTCTACCCTGAAGAACTAATGACAGCAATCATTGGAAATACTGATTATGACTGGAAACAG
TTTGAACAGAATTCAAAGTATGAGCAAGGATACCAAAAATCACATCCTACTATACAGTTGTTTTGGAAGG
CTTTCCACAAACTAACCTTGGATGAAAAGAAAAAATTCCTCTTTTTCCTTACAGGACGTGATAGGCTGCA
TGCAAGAGGCATACAGAAAATGGAAATAGTATTTCGCTGTCCTGAAACTTTCAGTGAAAGAGATCACCCA
ACATCAATAACTTGTCATAATATTCTCTCCCTCCCTAAGTATTCTACAATGGAAAGAATGGAGGAAGCAC
TTCAAGTAGCCATCAACAACAACAGAGGATTTGTCTCACCCATGCTCACACAGTCATAA

Translation (1022 aa):
MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQ
ALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHS
LALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSA
GQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQ
LVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDISCLISAEDFVDVQVKH
IFAGTYANFVTTHQDTSSTRAPGKTLPEISRISQSMAEKWIAVKRRSTEHEMAKSEIRMIFSSPACLTAS
FLKKRGTGETTSIDVDLEMARDTFKKLTKKEWISSMITTCLEDDLLRALPCHSPHQEALSVFLLLPECPV
MHDSKNWKNLVVPFAKAVCEMSKQSLQVLKKCWAFLQESSLNPLIQMLKAAIISQLLHQTKTEQDHCNVK
ALLGMMKELHKVNKANCRLPENTFNINELSNLLNFYIDRGRQLFRDNHLIPAETPSPVIFSDFPFIFNSL
SKIKLLQADSHIKMQMSEKKAYMLMHETILQKKDEFPPSPRFILRVRRSRLVKDALRQLSQAEATDFCKV
LVVEFINEICPESGGVSSEFFHCMFEEMTKPEYGMFMYPEMGSCMWFPAKPKPEKKRYFLFGMLCGLSLF
NLNVANLPFPLALYKKLLDQKPSLEDLKELSPRLGKSLQEVLDDAADDIGDALCIRFSIHWDQNDVDLIP
NGISIPVDQTNKRDYVSKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQ
FEQNSKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQKMEIVFRCPETFSERDHP
TSITCHNILSLPKYSTMERMEEALQVAINNNRGFVSPMLTQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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