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Report for CCDS4614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4614.1 Public Homo sapiens 6 BTN1A1 24 110 108 CCDS HistoryNCBI Gene:696Re-query CCDS DB by CCDS ID:4614.1Re-query CCDS DB by GeneID:696See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4614.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244513.10 ENSP00000244513.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000244513.10Link to Ensembl Protein Viewer:ENSP00000244513.6Re-query CCDS DB by Nucleotide ID:ENST00000244513Re-query CCDS DB by Protein ID:ENSP00000244513
Original member Current member EBI ENST00000684113.1 ENSP00000507193.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684113.1Link to Ensembl Protein Viewer:ENSP00000507193.1Re-query CCDS DB by Nucleotide ID:ENST00000684113Re-query CCDS DB by Protein ID:ENSP00000507193
Original member Current member NCBI NM_001732.3 NP_001723.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001732.3Link to Protein Sequence:NP_001723.2Re-query CCDS DB by Nucleotide ID:NM_001732Re-query CCDS DB by Protein ID:NP_001723Link to BLAST:NP_001723.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001723.2 526 Q13410 526 100% 0 0

Chromosomal Locations for CCDS 4614.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26501287 26501365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26501590 26501937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26504925 26505206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26506683 26506832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26507950 26507970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26508061 26508087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26508501 26509174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGCAGTTTTCCCAAGCTCCGGTCTCCCCAGATGTCTGCTCACCCTCATTCTCCTCCAGCTGCCCAAAC
TGGATTCAGCTCCCTTTGACGTGATTGGACCCCCGGAGCCCATCCTGGCCGTTGTGGGTGAGGACGCCGA
GCTGCCCTGTCGCCTGTCTCCGAACGCGAGCGCCGAGCACTTGGAGCTACGCTGGTTCCGAAAGAAGGTT
TCGCCGGCCGTGCTGGTGCATAGGGACGGGCGCGAGCAGGAAGCCGAGCAGATGCCCGAGTACCGCGGGC
GGGCGACGCTGGTCCAGGACGGCATCGCCAAGGGGCGCGTGGCCTTGAGGATCCGTGGCGTCAGAGTCTC
TGACGACGGGGAGTACACGTGCTTTTTCAGGGAGGATGGAAGCTACGAAGAAGCCCTGGTGCATCTGAAG
GTGGCTGCTCTGGGCTCTGACCCTCACATCAGTATGCAAGTTCAAGAGAATGGAGAAATCTGTCTGGAGT
GCACCTCAGTGGGATGGTACCCAGAGCCCCAGGTGCAGTGGAGAACTTCCAAGGGAGAGAAGTTTCCATC
TACATCAGAGTCCAGGAATCCTGATGAAGAAGGTTTGTTCACTGTGGCTGCTTCAGTGATCATCAGAGAC
ACTTCTGCGAAAAATGTGTCCTGCTACATCCAGAATCTCCTTCTTGGCCAGGAGAAGAAAGTAGAAATAT
CCATACCAGCTTCCTCCCTCCCAAGGCTGACTCCCTGGATAGTGGCTGTGGCTGTCATCCTGATGGTTCT
AGGACTTCTCACCATTGGGTCCATATTTTTCACTTGGAGACTATACAACGAAAGACCCAGAGAGAGGAGG
AATGAATTCAGCTCTAAAGAGAGACTCCTGGAAGAACTCAAATGGAAAAAGGCTACCTTGCATGCAGTTG
ATGTGACTCTGGACCCAGACACAGCTCATCCCCACCTCTTTCTTTATGAGGATTCAAAATCTGTTCGACT
GGAAGATTCACGTCAGAAACTGCCTGAGAAAACAGAGAGATTTGACTCCTGGCCCTGTGTGTTGGGCCGT
GAGACCTTCACCTCAGGAAGGCATTACTGGGAGGTGGAGGTGGGAGACAGGACTGACTGGGCAATCGGCG
TGTGTAGGGAGAATGTGATGAAGAAAGGATTTGACCCCATGACTCCTGAGAATGGGTTCTGGGCTGTAGA
GTTGTATGGAAATGGGTACTGGGCCCTCACTCCTCTCCGGACCCCTCTCCCATTGGCAGGGCCCCCACGC
CGGGTTGGGATTTTCCTAGACTATGAATCAGGAGACATCTCCTTCTACAACATGAATGATGGATCTGATA
TCTATACTTTCTCCAATGTCACTTTCTCTGGCCCCCTCCGGCCCTTCTTTTGCCTATGGTCTAGCGGTAA
AAAGCCCCTGACCATCTGCCCAATTGCTGATGGGCCTGAGAGGGTCACAGTCATTGCTAATGCCCAGGAC
CTTTCTAAGGAGATCCCATTGTCCCCCATGGGGGAGGACTCTGCCCCTAGGGATGCAGACACTCTCCATT
CTAAGCTAATCCCTACCCAACCCAGCCAAGGGGCACCTTAA

Translation (526 aa):
MAVFPSSGLPRCLLTLILLQLPKLDSAPFDVIGPPEPILAVVGEDAELPCRLSPNASAEHLELRWFRKKV
SPAVLVHRDGREQEAEQMPEYRGRATLVQDGIAKGRVALRIRGVRVSDDGEYTCFFREDGSYEEALVHLK
VAALGSDPHISMQVQENGEICLECTSVGWYPEPQVQWRTSKGEKFPSTSESRNPDEEGLFTVAASVIIRD
TSAKNVSCYIQNLLLGQEKKVEISIPASSLPRLTPWIVAVAVILMVLGLLTIGSIFFTWRLYNERPRERR
NEFSSKERLLEELKWKKATLHAVDVTLDPDTAHPHLFLYEDSKSVRLEDSRQKLPEKTERFDSWPCVLGR
ETFTSGRHYWEVEVGDRTDWAIGVCRENVMKKGFDPMTPENGFWAVELYGNGYWALTPLRTPLPLAGPPR
RVGIFLDYESGDISFYNMNDGSDIYTFSNVTFSGPLRPFFCLWSSGKKPLTICPIADGPERVTVIANAQD
LSKEIPLSPMGEDSAPRDADTLHSKLIPTQPSQGAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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