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Report for CCDS45940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45940.1 Public Homo sapiens 19 GPR108 24 110 108 CCDS HistoryNCBI Gene:56927Re-query CCDS DB by CCDS ID:45940.1Re-query CCDS DB by GeneID:56927See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430424.8 ENSP00000401284.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430424.8Link to Ensembl Protein Viewer:ENSP00000401284.2Re-query CCDS DB by Nucleotide ID:ENST00000430424Re-query CCDS DB by Protein ID:ENSP00000401284
Original member Current member NCBI NM_001394714.1 NP_001381643.1 Accepted alive Link to Nucleotide Sequence:NM_001394714.1Link to Protein Sequence:NP_001381643.1Re-query CCDS DB by Nucleotide ID:NM_001394714Re-query CCDS DB by Protein ID:NP_001381643Link to BLAST:NP_001381643.1
Original member Current member NCBI NM_001394715.1 NP_001381644.1 Accepted alive Link to Nucleotide Sequence:NM_001394715.1Link to Protein Sequence:NP_001381644.1Re-query CCDS DB by Nucleotide ID:NM_001394715Re-query CCDS DB by Protein ID:NP_001381644Link to BLAST:NP_001381644.1
Original member Current member NCBI NM_001394716.1 NP_001381645.1 Accepted alive Link to Nucleotide Sequence:NM_001394716.1Link to Protein Sequence:NP_001381645.1Re-query CCDS DB by Nucleotide ID:NM_001394716Re-query CCDS DB by Protein ID:NP_001381645Link to BLAST:NP_001381645.1
Original member Current member NCBI NM_020171.2 NP_064556.1 Accepted alive Link to Nucleotide Sequence:NM_020171.2Link to Protein Sequence:NP_064556.1Re-query CCDS DB by Nucleotide ID:NM_020171Re-query CCDS DB by Protein ID:NP_064556Link to BLAST:NP_064556.1

Chromosomal Locations for CCDS 45940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6730312 6730384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6730987 6731111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6731199 6731282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6731473 6731522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6731891 6731934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732025 6732155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732263 6732380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732476 6732549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6732987 6733062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6733168 6733298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGATCCGGGAGAAGAACCCCGATGGCTTCCTGTCGGCAGCGGAGATGCCCCTTTTCAAGCTCTACATGG
TCATGTCCGCCTGCTTCCTGGCCGCTGGCATCTTCTGGGTGTCCATCCTCTGCAGGAACACGTACAGCGT
CTTCAAGATCCACTGGCTCATGGCGGCCTTGGCCTTCACCAAGAGCATCTCTCTCCTCTTCCACAGCATC
AACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTTGCCGTCATGTACTACATCGCACACC
TGCTGAAGGGCGCCCTCCTCTTCATCACCATCGCCCTGATTGGCTCAGGCTGGGCCTTCATCAAGTACGT
CCTGTCGGATAAGGAGAAGAAGGTCTTTGGGATCGTGATCCCCATGCAGGTCCTGGCCAACGTGGCCTAC
ATCATCATCGAGTCCCGCGAGGAAGGCGCCAGCGACTACGTGCTGTGGAAGGAGATTTTGTTCCTGGTGG
ACCTCATCTGCTGTGGTGCCATCCTGTTCCCCGTAGTCTGGTCCATCCGGCATCTCCAGGATGCGTCTGG
CACAGACGGGAAGGTGGCAGTGAACCTGGCCAAGCTGAAGCTGTTCCGGCATTACTATGTCATGGTCATC
TGCTACGTCTACTTCACCCGCATCATCGCCATCCTGCTGCAGGTGGCTGTGCCCTTTCAGTGGCAGTGGC
TGTACCAGCTCTTGGTGGAGGGCTCCACCCTGGCCTTCTTCGTGCTCACGGGCTACAAGTTCCAGCCCAC
AGGAAACAACCCGTACCTGCAGCTGCCCCAGGAGGACGAGGAGGATGTTCAGATGGAGCAAGTAATGACG
GACTCTGGGTTCCGGGAAGGCCTCTCCAAAGTCAACAAAACAGCCAGCGGGCGGGAACTGTTATGA

Translation (301 aa):
MIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLMAALAFTKSISLLFHSI
NYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDKEKKVFGIVIPMQVLANVAY
IIIESREEGASDYVLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLAKLKLFRHYYVMVI
CYVYFTRIIAILLQVAVPFQWQWLYQLLVEGSTLAFFVLTGYKFQPTGNNPYLQLPQEDEEDVQMEQVMT
DSGFREGLSKVNKTASGRELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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