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Report for CCDS44923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44923.1 Public Homo sapiens 12 APOF 24 110 108 CCDS HistoryNCBI Gene:319Re-query CCDS DB by CCDS ID:44923.1Re-query CCDS DB by GeneID:319See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398189.4 ENSP00000381250.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398189.4Link to Ensembl Protein Viewer:ENSP00000381250.3Re-query CCDS DB by Nucleotide ID:ENST00000398189Re-query CCDS DB by Protein ID:ENSP00000381250
Original member Current member NCBI NM_001638.4 NP_001629.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001638.4Link to Protein Sequence:NP_001629.1Re-query CCDS DB by Nucleotide ID:NM_001638Re-query CCDS DB by Protein ID:NP_001629Link to BLAST:NP_001629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001629.1 326 Q13790 326 100% 0 0

Chromosomal Locations for CCDS 44923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56361225 56362189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56362730 56362745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGACTGGACTGTGTGGGTACTCTGCTCCAGACATGCGTGGCCTCAGACTCATCATGATACCAGTTGAGC
TGCTACTTTGCTACCTCCTGCTGCACCCTGTGGATGCCACTTCATATGGAAAGCAGACAAATGTCTTGAT
GCACTTTCCCTTGTCCTTGGAATCCCAGACACCCTCCTCAGACCCCTTGTCCTGCCAATTTCTGCACCCA
AAGTCACTGCCTGGTTTCAGCCACATGGCCCCTCTACCCAAGTTCTTGGTAAGCCTGGCTCTAAGGAATG
CCCTGGAGGAAGCTGGTTGTCAGGCTGATGTTTGGGCTCTACAGCTACAGCTCTACCGCCAGGGTGGTGT
GAATGCTACACAGGTCCTCATCCAGCATCTTCGAGGGCTCCAGAAAGGCAGAAGCACAGAGAGGAACGTG
TCAGTGGAAGCCCTGGCCTCTGCTCTGCAGCTGTTAGCCAGGGAGCAGCAAAGCACAGGAAGGGTCGGGC
GCTCCCTCCCGACAGAGGACTGTGAGAATGAGAAGGAGCAAGCTGTGCACAATGTAGTCCAGCTGCTGCC
AGGAGTGGGAACCTTCTACAACCTGGGCACAGCTTTGTATTATGCTACTCAAAACTGCCTGGGCAAGGCC
AGGGAACGAGGCCGAGATGGGGCCATAGATCTGGGATATGACCTTCTGATGACCATGGCTGGGATGTCAG
GGGGGCCTATGGGTCTAGCGATCAGTGCTGCACTTAAACCTGCATTAAGGTCTGGGGTTCAGCAGTTGAT
CCAGTATTACCAAGATCAGAAAGACGCAAACATCTCTCAGCCGGAGACCACCAAGGAGGGTTTGAGGGCC
ATCTCAGATGTGAGTGACTTGGAAGAAACAACTACTCTGGCTTCTTTCATATCAGAAGTAGTAAGTTCAG
CTCCCTACTGGGGGTGGGCCATAATCAAGAGCTATGACTTAGATCCTGGGGCTGGGAGTCTTGAGATATA
A

Translation (326 aa):
MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSSDPLSCQFLHP
KSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNATQVLIQHLRGLQKGRSTERNV
SVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVHNVVQLLPGVGTFYNLGTALYYATQNCLGKA
RERGRDGAIDLGYDLLMTMAGMSGGPMGLAISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRA
ISDVSDLEETTTLASFISEVVSSAPYWGWAIIKSYDLDPGAGSLEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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