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Report for CCDS44849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44849.1 Public Homo sapiens 12 LMNTD1 24 110 108 CCDS HistoryNCBI Gene:160492Re-query CCDS DB by CCDS ID:44849.1Re-query CCDS DB by GeneID:160492See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44849.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458174.7 ENSP00000407353.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458174.7Link to Ensembl Protein Viewer:ENSP00000407353.2Re-query CCDS DB by Nucleotide ID:ENST00000458174Re-query CCDS DB by Protein ID:ENSP00000407353
Original member Current member NCBI NM_001145728.2 NP_001139200.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145728.2Link to Protein Sequence:NP_001139200.1Re-query CCDS DB by Nucleotide ID:NM_001145728Re-query CCDS DB by Protein ID:NP_001139200Link to BLAST:NP_001139200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139200.1 409 Q8N9Z9-5 409 100% 0 0

Chromosomal Locations for CCDS 44849.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25503760 25503800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25518795 25518967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25519858 25520075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526099 25526218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526769 25526955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25546374 25546554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25549326 25549546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25552871 25552959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGAAAGATACACAAGACATTCAGGAAGCTTCGAAGGCAATGCAGAATAAAGTCCATGAGCAGGAAGATA
AGAATGAGAAACAAAAACAAAGAGAAGACAAACTTGGAGTATATTCTTTAGTACATTTTTCCCCAAAGAT
GTTGGGTTCAGTTGCCACAACACTGCCATTGTCATCTTCAAATTCCAGTGGAATGCCTCTTGGTTACTAT
CTGTCTAGTCCTCAGATTAGTAGAGTAACTATATCAACAACTGGACAATTGACTTCTAAAGCTACTGTAG
GTAGCTGTTCCAGAGTGGAAAACAGCTTGGATGCCAGCCCCTTCTCAGTTCCGAAGAAACAGGATGAATC
ACCCATGATTGGGGATGGAGAAGATTATTTCCTTTCTTTGTTTGGTGATTCAAAGAAACTTACAGCACAC
TCAAACTACACTCAGAAAACTTTAAAATACTTTTCTATGATTCTTGAAGAAGTTGGCCAATTTACCTCCA
GTTCTCTTGGAGATGTTGAAATAGCTGAAGTGAATGTCAAGGGTTTGTTCGTGAAGCTCATTAACTCTTC
CCTTGACAAAGAAATGGCAATTGGAGATCATATTCTCCAGCAAAATGTGAATGGACAAACCATTTCTTTG
TACCGATTCCTTCCAAACATCGTAATGCAGGCAAATTCCACAGTAACAGTGTGGGCAGCAGCATCTGAAG
CAAAGCATCAACCTCCATCAGATTTTCTTTGGAAGGAACAAGACAAGTTTAGAGCAAGTCCTGATTGTAT
AACAATCCTGTGCAAACCGAACGGTCAAGCCATTGCGTGGTACACCCCTATCCACTGGAAGCAAGCGTGG
GAAAAATTAGATGCTGACGTTGAATTTAACAGATGTTCAGTAGTATCTCCAACATTCCGAAAGCGTGTGT
TTCAGTGGACAGCATCTACAGCTACAATAACTAAAGAAAAACAAGATCAACCTAAGAAAGATATCTCAAA
TTATCAGGTGGAACAAGCTCAAGTTCTTCTTAAGAGAGAGAAGGAAATCCCACCAACCGTTTTCCCTAAT
CGCAGCCCTTGGTGCCAGAATCCCTATGTCTCTGCACATCCTTACTGTCCTCTGATTGAACCACACAATA
CATCCACCGCTGGAGGCAGATTGGATAGACAGCCCAGGACTCGGTCAACCAGACCTAATCGAGCCTCAGG
GTCTAAGAAAAAGAAGACATCTGAGTCACAAAAGCAATAA

Translation (409 aa):
MKDTQDIQEASKAMQNKVHEQEDKNEKQKQREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYY
LSSPQISRVTISTTGQLTSKATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAH
SNYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISL
YRFLPNIVMQANSTVTVWAAASEAKHQPPSDFLWKEQDKFRASPDCITILCKPNGQAIAWYTPIHWKQAW
EKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQPKKDISNYQVEQAQVLLKREKEIPPTVFPN
RSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRSTRPNRASGSKKKKTSESQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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