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Report for CCDS44848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44848.1 Public Homo sapiens 12 LMNTD1 24 110 108 CCDS HistoryNCBI Gene:160492Re-query CCDS DB by CCDS ID:44848.1Re-query CCDS DB by GeneID:160492See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44848.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413632.6 ENSP00000393150.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413632.6Link to Ensembl Protein Viewer:ENSP00000393150.2Re-query CCDS DB by Nucleotide ID:ENST00000413632Re-query CCDS DB by Protein ID:ENSP00000393150
Original member Current member NCBI NM_001145729.1 NP_001139201.1 Accepted alive Link to Nucleotide Sequence:NM_001145729.1Link to Protein Sequence:NP_001139201.1Re-query CCDS DB by Nucleotide ID:NM_001145729Re-query CCDS DB by Protein ID:NP_001139201Link to BLAST:NP_001139201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139201.1 369 Q8N9Z9-4 369 100% 0 0

Chromosomal Locations for CCDS 44848.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25503760 25503800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25518795 25518967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25519858 25520075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25526769 25526955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25546374 25546554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25549326 25549546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25552871 25552959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGAAAGATACACAAGACATTCAGGAAGCTTCGAAGGCAATGCAGAATAAAGTCCATGAGCAGGAAGATA
AGAATGAGAAACAAAAACAAAGAGAAGACAAACTTGGAGTATATTCTTTAGTACATTTTTCCCCAAAGAT
GTTGGGTTCAGTTGCCACAACACTGCCATTGTCATCTTCAAATTCCAGTGGAATGCCTCTTGGTTACTAT
CTGTCTAGTCCTCAGATTAGTAGAGTAACTATATCAACAACTGGACAATTGACTTCTAAAGCTACTGTAG
GTAGCTGTTCCAGAGTGGAAAACAGCTTGGATGCCAGCCCCTTCTCAGTTCCGAAGAAACAGGATGAATC
ACCCATGATTGGGGATGGAGAAGATTATTTCCTTTCTTTGTTTGGTGATTCAAAGAAACTTACAGCACAC
TCAAACTACACTCAGAAAACTTTAAAATACTTTTCTATGATTCTTGAAGAAGTTGGCCAATTTACCTCCA
GTTCTCTTGGAGATGTTGAAATAGCTGAAGTGAATGTCAAGGGTTTGTTCGTGAAGCTCATTAACTCTTC
CCTTGACAAAGAAATGGCAATTGGAGATCATATTCTCCAGCAAAATGTGAATGGACAAACCATTTCTTTG
TACCGATTCCTTCCAAACATCGTAATGCAGGCAAATTCCACAGTAACAGCCATTGCGTGGTACACCCCTA
TCCACTGGAAGCAAGCGTGGGAAAAATTAGATGCTGACGTTGAATTTAACAGATGTTCAGTAGTATCTCC
AACATTCCGAAAGCGTGTGTTTCAGTGGACAGCATCTACAGCTACAATAACTAAAGAAAAACAAGATCAA
CCTAAGAAAGATATCTCAAATTATCAGGTGGAACAAGCTCAAGTTCTTCTTAAGAGAGAGAAGGAAATCC
CACCAACCGTTTTCCCTAATCGCAGCCCTTGGTGCCAGAATCCCTATGTCTCTGCACATCCTTACTGTCC
TCTGATTGAACCACACAATACATCCACCGCTGGAGGCAGATTGGATAGACAGCCCAGGACTCGGTCAACC
AGACCTAATCGAGCCTCAGGGTCTAAGAAAAAGAAGACATCTGAGTCACAAAAGCAATAA

Translation (369 aa):
MKDTQDIQEASKAMQNKVHEQEDKNEKQKQREDKLGVYSLVHFSPKMLGSVATTLPLSSSNSSGMPLGYY
LSSPQISRVTISTTGQLTSKATVGSCSRVENSLDASPFSVPKKQDESPMIGDGEDYFLSLFGDSKKLTAH
SNYTQKTLKYFSMILEEVGQFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISL
YRFLPNIVMQANSTVTAIAWYTPIHWKQAWEKLDADVEFNRCSVVSPTFRKRVFQWTASTATITKEKQDQ
PKKDISNYQVEQAQVLLKREKEIPPTVFPNRSPWCQNPYVSAHPYCPLIEPHNTSTAGGRLDRQPRTRST
RPNRASGSKKKKTSESQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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