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Report for CCDS44148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44148.1 Public Homo sapiens 1 ZYG11A 24 110 108 CCDS HistoryNCBI Gene:440590Re-query CCDS DB by CCDS ID:44148.1Re-query CCDS DB by GeneID:440590See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44148.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371528.2 ENSP00000360583.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371528.2Link to Ensembl Protein Viewer:ENSP00000360583.1Re-query CCDS DB by Nucleotide ID:ENST00000371528Re-query CCDS DB by Protein ID:ENSP00000360583
Original member Current member NCBI NM_001004339.3 NP_001004339.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004339.3Link to Protein Sequence:NP_001004339.2Re-query CCDS DB by Nucleotide ID:NM_001004339Re-query CCDS DB by Protein ID:NP_001004339Link to BLAST:NP_001004339.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004339.2 759 Q6WRX3-1 759 100% 0 0

Chromosomal Locations for CCDS 44148.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52842884 52842973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52854465 52854630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52856998 52857749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52860731 52860871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52863981 52864157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52866503 52866567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52867539 52867638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52867727 52867777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52877682 52877843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52877925 52877969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52881471 52881665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52885833 52885894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52886956 52887053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52892782 52892957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGGTTCATTTCTTGCACCCGGGCCACACGCCCCGGAACATCGTCCCTCCTGACGCTCAGAAGGATGCCC
TGGGCTGCTGCGTGGTACAGGAAGAGGCATCTCCCTACACTTTGGTCAACATCTGCCTGAATGTCCTGAT
TGCTAACCTGGAGAAATTGTGTTCTGAAAGACCTGATGGAACACTGTGCCTTCCGGAGCATTGGAGTTTC
CCTCAGGAAGTAGCCGAGCGATTTCTCAGGGTGATGACTTGGCAAGGCAAGCTGACTGACAGAACAGCCA
GCATTTTCCGAGGCAACCAAATGAAACTGAAGCTGGTCAATATCCAAAAAGCTAAAATCTCTACAGCTGC
ATTCATAAAAGCCTTCTGCCGTCATAAGCTCATTGAACTGAATGCTACTGCAGTGCACGCTGACCTCCCA
GTTCCAGACATCATAAGTGGACTCTGCAGCAATAGGTGGATCCAGCAAAACCTCCAGTGTCTCCTGTTAG
ACTCGACAAGCATCCCTCAAAATTCAAGATTACTGTTCTTTAGTCAGCTCACTGGTCTTCGCATTTTAAG
TGTTTTTAATGTTTGTTTTCATACTGAAGACCTGGCTAATGTTTCTCAGTTACCAAGACTGGAAAGCTTA
GATATCTCTAATACTCTAGTCACTGATATTTCTGCACTGCTTACCTGTAAGGATCGATTGAAGTCTCTCA
CAATGCACTATCTGAAATGCCTGGCCATGACCAAATCACAAATTCTTGCAGTCATTAGAGAACTTAAATG
TCTGCTTCACCTTGATATTTCTGATCACAGGCAACTCAAATCAGACCTAGCTTTTCATTTGCTACAGCAG
AAGGATATCCTGCCCAATGTTGTGTCATTGGATATTTCTGGGGGCAATTGCATCACTGATGAAGCTGTAG
AACTGTTTATACGACTGCGGCCTGCCATGCAATTTGTGGGACTATTGGCCACGGATGCTGGCTCTTCTGA
CTTCTTTACTACAAAGCAAGGCTTGAGGGTTGCTGGAGGAGCCAGTATGAGTCAGATTTCAGAAGCACTG
AGCCGATACAGGAACAGATCATGTTTTGTGAAGGAAGCCCTCCACAGGCTGTTCACAGAGACATTTTCAA
TGGAGGTAACCATGCCTGCTATTTTAAAGCTTGTGGCTATAGGAATGAGGAATCACCCATTGGATTTGCG
AGTGCAGTTCACAGCCAGTGCTTGCGCTCTCAACCTAACACGCCAGGGCCTGGCCAAGGGGATGCCTGTT
CGCCTGTTGTCAGAGGTCACCTGTCTACTTTTCAAGGCTCTGAAAAATTTCCCCCATTACCAGCAGTTAC
AGAAGAATTGTCTTCTCTCCTTAACCAATTCCAGGATTCTTGTGGATGTTCCATTTGACAGGTTTGATGC
TGCCAAGTTTGTCATGAGATGGCTCTGTAAGCATGAAAACCCCAAGATGCAAACAATGGCAGTGAGTGTC
ACCTCTATTCTGGCTCTGCAGCTCTCACCTGAGCAAACGGCACAGCTTGAAGAGCTTTTCATGGCAGTTA
AGGAACTTCTAGCAATAGTAAAACAAAAGACTACTGAGAATTTAGATGATGTCACCTTCTTGTTTACTTT
GAAAGCACTTTGGAATCTTACAGATGGGTCTCCAGCTGCCTGCAAGCACTTCATTGAAAATCAAGGATTG
CAAATCTTCATCCAAGTCTTGGAGACCTTTTCAGAGTCAGCAATACAAAGCAAAGTACTTGGTCTTTTGA
ACAACATAGCAGAAGTCAGAGAGCTCTCTTCCAAGCTGGTGACCGAAGATGTGCTGAAGCATATCAACAG
TTTACTCTGTAGCAGGGAAATGGAAGTCAGCTATTTTGCTGCAGGTATCATAGCCCACCTGACATCTGAC
AGACAGCTTTGGATATCCCGTGACTTCCAGAGGCGTACTCTTCTCCAAGATCTGCATGCAACCATACAGA
ATTGGCCAAGTTCAAGTTGTAAGATGACAGCATTGGTGACCTATAGATCTTTCAAGACATTTTTCCCGCT
CCTTGGCAACTTCTCTCAACCAGAGGTTCAGCTCTGGGCACTATGGGCTATGTATCATGTCTGCAGTAAA
AATCCCAGCAAATACTGCAAAATGTTAGTTGAAGAAGAAGGATTGCAGCTTTTGTGTGATATCCAGGAGC
ACAGTGAGGCAACCCCCAAAGCACAGCAGATTGCAGCCTCCATTCTGGATGACTTCAGAATGCATTTCAT
GAATTATCAGAGGCCCACTCTGTGTCAAATGCCCTTCTGA

Translation (759 aa):
MVHFLHPGHTPRNIVPPDAQKDALGCCVVQEEASPYTLVNICLNVLIANLEKLCSERPDGTLCLPEHWSF
PQEVAERFLRVMTWQGKLTDRTASIFRGNQMKLKLVNIQKAKISTAAFIKAFCRHKLIELNATAVHADLP
VPDIISGLCSNRWIQQNLQCLLLDSTSIPQNSRLLFFSQLTGLRILSVFNVCFHTEDLANVSQLPRLESL
DISNTLVTDISALLTCKDRLKSLTMHYLKCLAMTKSQILAVIRELKCLLHLDISDHRQLKSDLAFHLLQQ
KDILPNVVSLDISGGNCITDEAVELFIRLRPAMQFVGLLATDAGSSDFFTTKQGLRVAGGASMSQISEAL
SRYRNRSCFVKEALHRLFTETFSMEVTMPAILKLVAIGMRNHPLDLRVQFTASACALNLTRQGLAKGMPV
RLLSEVTCLLFKALKNFPHYQQLQKNCLLSLTNSRILVDVPFDRFDAAKFVMRWLCKHENPKMQTMAVSV
TSILALQLSPEQTAQLEELFMAVKELLAIVKQKTTENLDDVTFLFTLKALWNLTDGSPAACKHFIENQGL
QIFIQVLETFSESAIQSKVLGLLNNIAEVRELSSKLVTEDVLKHINSLLCSREMEVSYFAAGIIAHLTSD
RQLWISRDFQRRTLLQDLHATIQNWPSSSCKMTALVTYRSFKTFFPLLGNFSQPEVQLWALWAMYHVCSK
NPSKYCKMLVEEEGLQLLCDIQEHSEATPKAQQIAASILDDFRMHFMNYQRPTLCQMPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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