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Report for CCDS43946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43946.1 Public Homo sapiens X GAGE12F 24 110 108 CCDS HistoryNCBI Gene:100008586Re-query CCDS DB by CCDS ID:43946.1Re-query CCDS DB by GeneID:100008586See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440137.2 ENSP00000404123.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000440137.2Link to Ensembl Protein Viewer:ENSP00000404123.1Re-query CCDS DB by Nucleotide ID:ENST00000440137Re-query CCDS DB by Protein ID:ENSP00000404123
Original member Current member EBI ENST00000639028.1 ENSP00000491865.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639028.1Link to Ensembl Protein Viewer:ENSP00000491865.1Re-query CCDS DB by Nucleotide ID:ENST00000639028Re-query CCDS DB by Protein ID:ENSP00000491865
Original member Current member NCBI NM_001098405.3 NP_001091875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098405.3Link to Protein Sequence:NP_001091875.1Re-query CCDS DB by Nucleotide ID:NM_001098405Re-query CCDS DB by Protein ID:NP_001091875Link to BLAST:NP_001091875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091875.1 117 P0CL80-1 117 100% 0 0

Chromosomal Locations for CCDS 43946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49561997 49562080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49562546 49562666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49565495 49565620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49568092 49568114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAGTTGGCGAGGAAGATCGACCTATTATTGGCCTAGACCAAGGCGCTATGTACAGCCTCCTGAAATGA
TTGGGCCTATGCGGCCCGAGCAGTTCAGTGATGAAGTGGAACCAGCAACACCTGAAGAAGGGGAACCAGC
AACTCAACGTCAGGATCCTGCAGCTGCTCAGGAGGGAGAGGATGAGGGAGCATCTGCAGGTCAAGGGCCG
AAGCCTGAAGCTCATAGCCAGGAACAGGGTCACCCACAGACTGGGTGTGAGTGTGAAGATGGTCCTGATG
GGCAGGAGATGGACCCGCCAAATCCAGAGGAGGTGAAAACGCCTGAAGAAGGTGAAAAGCAATCACAGTG
TTAA

Translation (117 aa):
MSWRGRSTYYWPRPRRYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGEDEGASAGQGP
KPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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