NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4309.1 Public Homo sapiens 5 MYOZ3 24 110 108 CCDS HistoryNCBI Gene:91977Re-query CCDS DB by CCDS ID:4309.1Re-query CCDS DB by GeneID:91977See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297130.4 ENSP00000297130.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297130.4Link to Ensembl Protein Viewer:ENSP00000297130.4Re-query CCDS DB by Nucleotide ID:ENST00000297130Re-query CCDS DB by Protein ID:ENSP00000297130
Original member Current member EBI ENST00000517768.6 ENSP00000428815.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517768.6Link to Ensembl Protein Viewer:ENSP00000428815.1Re-query CCDS DB by Nucleotide ID:ENST00000517768Re-query CCDS DB by Protein ID:ENSP00000428815
Original member Current member NCBI NM_001122853.3 NP_001116325.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122853.3Link to Protein Sequence:NP_001116325.1Re-query CCDS DB by Nucleotide ID:NM_001122853Re-query CCDS DB by Protein ID:NP_001116325Link to BLAST:NP_001116325.1
Original member Current member NCBI NM_133371.5 NP_588612.2 Accepted alive Link to Nucleotide Sequence:NM_133371.5Link to Protein Sequence:NP_588612.2Re-query CCDS DB by Nucleotide ID:NM_133371Re-query CCDS DB by Protein ID:NP_588612Link to BLAST:NP_588612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116325.1 251 Q8TDC0-1 251 100% 0 0
NP_588612.2 251 Q8TDC0-1 251 100% 0 0

Chromosomal Locations for CCDS 4309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150662942 150663002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150670484 150670638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150671597 150671650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150671755 150671908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150672340 150672502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150676707 150676875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGATCCCCAAGGAGCAGAAGGGGCCAGTGATGGCTGCCATGGGGGACCTCACTGAACCAGTCCCTACGC
TG
GACCTGGGCAAGAAGCTGAGCGTGCCCCAGGACCTGATGATGGAGGAGCTGTCACTACGCAACAACAG
A
GGGTCCCTCCTCTTCCAGAAGAGGCAGCGCCGTGTGCAGAAGTTCACTTTCGAGTTAGCAGCCAGCCAG
CGG
GCGATGCTGGCCGGAAGCGCCAGGAGGAAGGTGACTGGAACAGCGGAGTCGGGGACGGTTGCCAATG
CC
AATGGCCCTGAGGGGCCGAACTACCGCTCGGAGCTCCACATCTTCCCGGCCTCACCCGGGGCCTCACT
C
GGGGGTCCCGAGGGCGCCCACCCTGCAGCCGCCCCTGCTGGGTGCGTCCCCAGCCCCAGCGCCCTGGCG
CCA
GGCTATGCGGAGCCGCTGAAGGGCGTCCCGCCAGAGAAGTTCAACCACACCGCCATCTCCAAGGGCT
AC
CGCTGCCCTTGGCAGGAGTTCGTCAGCTACCGGGACTACCAGAGCGATGGCCGAAGTCACACCCCCAG
C
CCCAACGACTACCGAAATTTCAACAAGACCCCGGTGCCATTTGGAGGACCCCTCGTGGGGGGCACTTTT
CCC
AGGCCAGGCACCCCCTTCATCCCGGAGCCCCTCAGTGGCTTGGAACTCCTCCGTCTCAGACCCAGCT
TC
AACAGAGTGGCCCAGGGCTGGGTCCGTAACCTCCCAGAGTCCGAGGAGCTGTAG


Translation (251 aa):
MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQKFTFELAASQ
R
A
MLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALA
P
GYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGGPLVGGTF
P
RPGTPFIPEPLSGLELLRLRPSFNRVAQGWVRNLPESEEL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser