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Report for CCDS41730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41730.1 Public Homo sapiens 11 PKNOX2 24 110 108 CCDS HistoryNCBI Gene:63876Re-query CCDS DB by CCDS ID:41730.1Re-query CCDS DB by GeneID:63876See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298282.14 ENSP00000298282.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298282.14Link to Ensembl Protein Viewer:ENSP00000298282.8Re-query CCDS DB by Nucleotide ID:ENST00000298282Re-query CCDS DB by Protein ID:ENSP00000298282
Original member Current member NCBI NM_001382323.2 NP_001369252.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382323.2Link to Protein Sequence:NP_001369252.1Re-query CCDS DB by Nucleotide ID:NM_001382323Re-query CCDS DB by Protein ID:NP_001369252Link to BLAST:NP_001369252.1
Original member Current member NCBI NM_001382324.1 NP_001369253.1 Accepted alive Link to Nucleotide Sequence:NM_001382324.1Link to Protein Sequence:NP_001369253.1Re-query CCDS DB by Nucleotide ID:NM_001382324Re-query CCDS DB by Protein ID:NP_001369253Link to BLAST:NP_001369253.1
Original member Current member NCBI NM_001382325.1 NP_001369254.1 Accepted alive Link to Nucleotide Sequence:NM_001382325.1Link to Protein Sequence:NP_001369254.1Re-query CCDS DB by Nucleotide ID:NM_001382325Re-query CCDS DB by Protein ID:NP_001369254Link to BLAST:NP_001369254.1
Original member Current member NCBI NM_001382326.1 NP_001369255.1 Accepted alive Link to Nucleotide Sequence:NM_001382326.1Link to Protein Sequence:NP_001369255.1Re-query CCDS DB by Nucleotide ID:NM_001382326Re-query CCDS DB by Protein ID:NP_001369255Link to BLAST:NP_001369255.1
Original member Current member NCBI NM_001382327.1 NP_001369256.1 Accepted alive Link to Nucleotide Sequence:NM_001382327.1Link to Protein Sequence:NP_001369256.1Re-query CCDS DB by Nucleotide ID:NM_001382327Re-query CCDS DB by Protein ID:NP_001369256Link to BLAST:NP_001369256.1
Original member Current member NCBI NM_001382328.1 NP_001369257.1 Accepted alive Link to Nucleotide Sequence:NM_001382328.1Link to Protein Sequence:NP_001369257.1Re-query CCDS DB by Nucleotide ID:NM_001382328Re-query CCDS DB by Protein ID:NP_001369257Link to BLAST:NP_001369257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369252.1 472 Q96KN3-1 472 100% 0 0
NP_001369253.1 472 Q96KN3-1 472 100% 0 0
NP_001369254.1 472 Q96KN3-1 472 100% 0 0
NP_001369255.1 472 Q96KN3-1 472 100% 0 0
NP_001369256.1 472 Q96KN3-1 472 100% 0 0
NP_001369257.1 472 Q96KN3-1 472 100% 0 0

Chromosomal Locations for CCDS 41730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 125351306 125351392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125367846 125367985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125385551 125385722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125397874 125398062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125410196 125410325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125410779 125410876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125411746 125411865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125429012 125429088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125429963 125430141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125431166 125431392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGATGCAACATGCCTCCCCAGCCCCCGCTCTGACGATGATGGCCACGCAGAATGTCCCGCCCCCACCCT
ACCAGGACAGCCCACAGATGACGGCAACCGCCCAGCCACCCTCCAAGGCCCAGGCTGTCCACATCTCTGC
CCCCTCAGCTGCTGCCAGCACACCTGTGCCCAGTGCCCCCATCGACCCCCAGGCCCAGCTGGAGGCTGAC
AAGCGAGCTGTATACAGGCACCCTCTTTTCCCGCTCCTGACGCTGCTGTTTGAGAAATGTGAACAGGCCA
CCCAGGGCTCTGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATCGAGAACTTTGTCCACCAGCAGGA
ACAGGAGCACAAACCCTTCTTCAGCGATGACCCAGAACTGGACAATCTGATGGTGAAGGCAATCCAGGTC
CTGAGAATCCACCTGCTGGAGCTGGAGAAAGTCAATGAACTCTGCAAGGACTTTTGTAACCGTTACATCA
CCTGCCTCAAAACCAAGATGCACAGCGACAACCTGCTCAGGAATGATCTAGGGGGGCCCTACTCCCCCAA
CCAGCCCTCCATCAACCTTCACTCACAGGACCTCCTGCAGAATTCCCCCAATTCCATGTCCGGAGTCTCC
AATAACCCCCAGGGGATTGTGGTCCCAGCCTCAGCGCTCCAGCAGGGCAACATCGCCATGACAACCGTCA
ACTCACAAGTTGTGTCAGGTGGAGCCTTATACCAACCGGTTACCATGGTAACCTCCCAGGGTCAGGTGGT
CACCCAAGCAATCCCCCAGGGAGCCATCCAGATCCAGAACACACAGGTTAACCTTGACCTCACCTCCCTC
CTGGACAATGAGGATAAGAAGTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATGCCACCAATATAATGC
GTTCTTGGCTCTTCCAGCATCTCATGCACCCCTACCCCACGGAGGATGAGAAGAGGCAGATCGCAGCCCA
GACCAACCTCACCCTCCTGCAAGTAAACAACTGGTTCATCAATGCCCGGAGGCGCATCCTGCAGCCCATG
CTTGATGCCAGCAACCCAGATCCTGCCCCCAAAGCCAAGAAGATCAAGTCTCAGCACCGGCCCACCCAAA
GATTCTGGCCCAACTCCATCGCTGCGGGGGTGCTGCAGCAGCAGGGCGGTGCCCCAGGGACAAACCCCGA
TGGTTCCATCAACTTGGACAACCTGCAGTCCCTGTCCTCAGACAGTGCCACCATGGCCATGCAGCAGGCT
ATGATGGCTGCACACGATGACTCATTGGATGGGACAGAAGAAGAGGATGAGGATGAGATGGAAGAGGAGG
AGGAGGAGGAGCTGGAGGAGGAGGTCGACGAGCTGCAGACGACAAATGTCAGCGACCTGGGCTTGGAACA
CAGTGACTCCCTGGAGTAG

Translation (472 aa):
MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAPIDPQAQLEAD
KRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQV
LRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVS
NNPQGIVVPASALQQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSL
LDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPM
LDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDSATMAMQQA
MMAAHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEHSDSLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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