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Report for CCDS4096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4096.1 Public Homo sapiens 5 NUDT12 24 110 108 CCDS HistoryNCBI Gene:83594Re-query CCDS DB by CCDS ID:4096.1Re-query CCDS DB by GeneID:83594See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4096.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230792.7 ENSP00000230792.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230792.7Link to Ensembl Protein Viewer:ENSP00000230792.2Re-query CCDS DB by Nucleotide ID:ENST00000230792Re-query CCDS DB by Protein ID:ENSP00000230792
Original member Current member NCBI NM_031438.4 NP_113626.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031438.4Link to Protein Sequence:NP_113626.1Re-query CCDS DB by Nucleotide ID:NM_031438Re-query CCDS DB by Protein ID:NP_113626Link to BLAST:NP_113626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113626.1 462 Q9BQG2-1 462 100% 0 0

Chromosomal Locations for CCDS 4096.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103550861 103550971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103552217 103552416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103554740 103554853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103555931 103556098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103558879 103559468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103560043 103560248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGTCTTCTGTAAAAAGAAGTCTGAAGCAAGAAATAGTTACTCAGTTTCACTGTTCAGCTGCTGAAGGAG
ATATTGCCAAGTTAACAGGAATACTCAGTCATTCTCCATCTCTTCTCAATGAAACTTCTGAAAATGGCTG
GACTGCTTTAATGTATGCGGCAAGGAATGGGCACCCAGAGATAGTCCAATTTCTGCTTGAGAAAGGGTGT
GACAGATCAATTGTCAATAAATCAAGGCAGACTGCACTGGACATTGCTGTATTTTGGGGTTATAAGCATA
TAGCTAATTTACTAGCTACTGCTAAAGGTGGGAAGAAGCCTTGGTTCCTAACGAATGAAGTGGAAGAATG
TGAAAATTATTTTAGCAAAACACTACTGGACCGGAAAAGTGAAAAGAGAAATAATTCTGACTGGCTGCTA
GCTAAAGAAAGCCATCCAGCCACAGTTTTTATTCTTTTCTCAGATTTAAATCCCTTGGTTACTCTAGGTG
GCAATAAAGAAAGTTTCCAACAGCCAGAAGTTAGGCTTTGTCAGCTGAACTACACAGATATAAAGGATTA
TTTGGCCCAGCCTGAGAAGATCACCTTGATTTTTCTTGGAGTAGAACTTGAAATAAAAGACAAACTACTT
AATTATGCTGGTGAAGTCCCGAGAGAGGAGGAAGATGGATTGGTTGCCTGGTTTGCTCTAGGTATAGATC
CTATTGCTGCTGAAGAATTCAAGCAAAGACATGAAAATTGTTACTTTCTTCATCCTCCTATGCCAGCCCT
TCTGCAATTGAAAGAAAAAGAAGCTGGGGTTGTAGCTCAAGCAAGATCTGTTCTTGCCTGGCACAGTCGA
TACAAGTTTTGCCCAACCTGTGGAAATGCAACTAAAATTGAAGAAGGTGGCTATAAGAGATTATGTTTAA
AAGAAGACTGTCCTAGTCTCAATGGCGTCCATAATACCTCATACCCAAGAGTTGATCCAGTAGTAATCAT
GCAAGTTATTCATCCAGATGGGACCAAATGCCTTTTAGGCAGGCAGAAAAGATTTCCCCCAGGCATGTTT
ACTTGCCTTGCTGGATTTATTGAGCCTGGAGAGACAATAGAAGATGCTGTTAGGAGAGAAGTAGAAGAGG
AAAGTGGAGTCAAAGTTGGCCATGTTCAGTATGTTGCTTGTCAACCATGGCCAATGCCTTCCTCCTTAAT
GATTGGTTGCTTAGCTCTAGCAGTGTCTACAGAAATTAAAGTTGACAAGAATGAAATAGAGGATGCCCGC
TGGTTCACTAGAGAACAGGTCCTGGATGTTCTGACCAAAGGGAAGCAGCAGGCATTCTTTGTGCCACCAA
GCCGAGCTATTGCACATCAATTAATCAAACACTGGATTAGAATAAATCCTAATCTCTAA

Translation (462 aa):
MSSVKRSLKQEIVTQFHCSAAEGDIAKLTGILSHSPSLLNETSENGWTALMYAARNGHPEIVQFLLEKGC
DRSIVNKSRQTALDIAVFWGYKHIANLLATAKGGKKPWFLTNEVEECENYFSKTLLDRKSEKRNNSDWLL
AKESHPATVFILFSDLNPLVTLGGNKESFQQPEVRLCQLNYTDIKDYLAQPEKITLIFLGVELEIKDKLL
NYAGEVPREEEDGLVAWFALGIDPIAAEEFKQRHENCYFLHPPMPALLQLKEKEAGVVAQARSVLAWHSR
YKFCPTCGNATKIEEGGYKRLCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMF
TCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVACQPWPMPSSLMIGCLALAVSTEIKVDKNEIEDAR
WFTREQVLDVLTKGKQQAFFVPPSRAIAHQLIKHWIRINPNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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