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Report for CCDS40793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40793.1 Public Mus musculus 9 Trim71 23 108 98 CCDS HistoryNCBI Gene:636931Re-query CCDS DB by CCDS ID:40793.1Re-query CCDS DB by GeneID:636931See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111816.2 ENSMUSP00000107447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111816.2Link to Ensembl Protein Viewer:ENSMUSP00000107447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111816Re-query CCDS DB by Protein ID:ENSMUSP00000107447
Original member Current member NCBI NM_001042503.2 NP_001035968.1 Accepted alive Link to Nucleotide Sequence:NM_001042503.2Link to Protein Sequence:NP_001035968.1Re-query CCDS DB by Nucleotide ID:NM_001042503Re-query CCDS DB by Protein ID:NP_001035968Link to BLAST:NP_001035968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035968.1 855 Q1PSW8 855 100% 0 0

Chromosomal Locations for CCDS 40793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114512645 114514096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114515733 114515867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114524954 114525121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114562305 114563117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGGCTTCGTTCCCGGAGACCGACTTCCAGATCTGCCTGCTGTGCAAGGAGATGTGCGGCTCGCCCGCGC
CGCTCTCCTCCAACTCGTCCGCCTCGTCGTCGTCCTCGCAGACTTCCACGTCGTCGGCGGGCGGCGGCGG
CCCCGGGGCGGCGGCGCGGCGTCTTCACGTCTTGCCCTGCCTGCACGCCTTCTGCCGGCCGTGCCTCGAG
GCGCACCGGCTGCCCGCTCCCGGAGGCGCGGGCCCCGCCGAGGCGCTGAAGCTGCGCTGCCCCGTATGTG
ACCAGAAGGTGGTCCTGGCCGAGGCGGCGGGCATGGACGCGCTGCCATCCTCCGCCTTCCTGCTCAGCAA
CCTGCTGGACGCCGTGGTGGCCACCGCCGAAGAGCCGCCGCCCAAGAACGGGCGCGCGGGCGGCGGCCCC
GGGGGCGCGGGCGGCCACAGCAACCACCGGCACCATGCGCACCACCCGGCCCAGCGCGCCGCCGCTCCAG
CGCCGCAGCCGCCGCCCGGCCCGGCCGCCTCCCCCGGGTCGCTGCTGATGCGCCGGCCGCACGGCTGCAG
CTCCTGCGACGAGGGCAACGCCGCCTCGTCGCGCTGCCTCGACTGCCAGGAACACCTGTGCGACAACTGT
GTCCGCGCGCACCAGCGCGTCCGCCTCACCAAGGACCATTACATCGAGCGCGGCCCTCCGGGGCCTGCGG
CCGCCTCCGCGGCACAGCAGCTGGGGCTCGGGCCGCCCTTCGCGGGCGCGCCCTTCTCCATTCTCTCGGT
GTTCCCGGAGCGCCTCGGCTTCTGCCAGCACCACGACGATGAGGTCCTGCATCTCTACTGTGACACCTGC
TCTGTCCCCATCTGCAGAGAGTGCACGCTGGGCCGCCACGGTGGCCACAGCTTCGCCTACCTCCAGGATG
CCCTGCAGGACTCTCGGGCACTCACCATCCAGCTGCTGGCTGATGCCCAGCAGGGCCGCCAGGCTCTCCA
GCTGAGCATCGAGCAGGCCCAGACTGTGGCAGAACAGGTGGAGATGAAGGCGAAGGTGGTCCAGTCTGAG
GTCAAGGCCGTCACAGCTCGCCACAAGAAGGCCCTGGAGGATCGGGAGTGTGAGCTGTTGTGGAAGGTGG
AGAAGATCCGGCAGGTGAAGGCGAAGTCTCTGTTCCTGCAGGTGGAGAAGCTGCGGCAGAGTCTCAGCAA
GCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAAGAGGGCCGCGCCCTGGACATCCTGCTGGCC
CGAGACCGGATGCTGGCCCAGGTGCAGGAGCTCAAGACCATCCGAGGCCTCCTGCAGCCCCAAGAAGATG
ACCGCATTATGTTCACGCCCCCTGACCAGGCCCTGTACCTCGCCCTCAAGTCTATTGGCTTTGTCAGCAG
CGGGGCCTTCGCCCCGCTCACGAAGGCTACAGGAGATGGCATCAAGCGTGCCCTTCAGGGGAAGGTGGCC
TCTTTCACTGTCATGGGCTACGACCACGATGGTGAGCCCCGCCATTCGGGAGGTGACCTGATGTCAGTTG
TGGTCCTCGGCCCCGACGGAAACCTGTTTGGTGCAGAAGTGAGCGACCAGCAGAATGGTACTTACATAGT
GAGCTACAGGCCCCAGCTTGAGGGTGAGCACTTGGTGTCGGTGACATTGTACAATCAGCATATAGAGAAC
AGCCCCTTCAAGGTCGTGGTCAAGTCGGGCCGCAGCTACGTGGGCATCGGGCTCCCCGGGCTGAGCTTCG
GCAGTGAAGGTGACGGGGAGGGCAAGCTCTGCAGGCCCTGGGGCGTGAGTGTTGATAAGGAGGGTTTCAT
CATAGTGGCTGACCGAAGCAATAACAGAATCCAGGTGTTTAAGCCCTGTGGTTCCTTCCACCACAAGTTT
GGTACCCTTGGGTCTCGTCCTGGGCAGTTTGACCGACCGGCTGGGGTGGCTTGTGACGCCTCCCGCAGGA
TCATAGTGGCCGACAAAGACAATCATCGCATTCAGATCTTCACCTTCGAGGGCCAGTTCCTTCTTAAGTT
TGGTGAGAAAGGCACCAAGAACGGGCAGTTTAACTACCCGTGGGATGTAGCAGTGAATTCTGAGGGCAAG
ATCCTCGTTTCAGACACCCGGAATCATCGCATCCAGTTGTTCGGACCGGACGGGGTCTTCCTGAACAAGT
ACGGCTTCGAGGGATCTCTCTGGAAGCACTTCGACTCTCCACGGGGCGTGGCTTTCAACAATGAAGGTCA
CCTGGTAGTCACCGACTTCAACAACCACCGGCTTCTGGTTATTCACCCTGATTGCCAATCTGCCCGCTTC
TTGGGTTCGGAGGGCTCGGGCAATGGGCAGTTCCTGCGACCACAGGGTGTGGCTGTGGACCAGGAAGGGA
GAATCATCGTAGCCGATTCCAGAAATCACCGCGTGCAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAA
GTTTGGTGCTCAAGGGAGTGGCTTCGGGCAGATGGACCGCCCCTCAGGTATCGCGGTCACCCCGGATGGA
TTGATCGTCGTGGTGGACTTTGGCAACAATCGAATCCTCATCTTCTAA

Translation (855 aa):
MASFPETDFQICLLCKEMCGSPAPLSSNSSASSSSSQTSTSSAGGGGPGAAARRLHVLPCLHAFCRPCLE
AHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLDAVVATAEEPPPKNGRAGGGP
GGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLMRRPHGCSSCDEGNAASSRCLDCQEHLCDNC
VRAHQRVRLTKDHYIERGPPGPAAASAAQQLGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTC
SVPICRECTLGRHGGHSFAYLQDALQDSRALTIQLLADAQQGRQALQLSIEQAQTVAEQVEMKAKVVQSE
VKAVTARHKKALEDRECELLWKVEKIRQVKAKSLFLQVEKLRQSLSKLESTISAVQQVLEEGRALDILLA
RDRMLAQVQELKTIRGLLQPQEDDRIMFTPPDQALYLALKSIGFVSSGAFAPLTKATGDGIKRALQGKVA
SFTVMGYDHDGEPRHSGGDLMSVVVLGPDGNLFGAEVSDQQNGTYIVSYRPQLEGEHLVSVTLYNQHIEN
SPFKVVVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVSVDKEGFIIVADRSNNRIQVFKPCGSFHHKF
GTLGSRPGQFDRPAGVACDASRRIIVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK
ILVSDTRNHRIQLFGPDGVFLNKYGFEGSLWKHFDSPRGVAFNNEGHLVVTDFNNHRLLVIHPDCQSARF
LGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPDG
LIVVVDFGNNRILIF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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