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Report for CCDS40311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40311.1 Public Mus musculus 8 Rab11fip1 23 108 98 CCDS HistoryNCBI Gene:75767Re-query CCDS DB by CCDS ID:40311.1Re-query CCDS DB by GeneID:75767See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054212.6 ENSMUSP00000058042.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054212.6Link to Ensembl Protein Viewer:ENSMUSP00000058042.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054212Re-query CCDS DB by Protein ID:ENSMUSP00000058042
Original member Current member NCBI NM_001080813.2 NP_001074282.1 Accepted alive Link to Nucleotide Sequence:NM_001080813.2Link to Protein Sequence:NP_001074282.1Re-query CCDS DB by Nucleotide ID:NM_001080813Re-query CCDS DB by Protein ID:NP_001074282Link to BLAST:NP_001074282.1

Chromosomal Locations for CCDS 40311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27143176 27143394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27150695 27150803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27151597 27153159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27154146 27154935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27156227 27156669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27174209 27174585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3501 nt):
ATGTCCCTGGCGGCCTCAGCGGGCCGGGGCCCGGGGACCATGTGGTCCCCTACCCACGTGCAGGTGACGG
TGCTACAGGCGCGGGGCTTGCGGGCCAAGGGACCCGGGGGCACGAGCGACGCGTACGCGGTGATCCAGGT
GGGCAAGGAGAAGTACGCCACGTCGGTGTCGGAGCGCAGCCTGGGCGCGCCCGTGTGGCGCGAGGAAGCC
ACCTTCGAGCTGCCTCCGCTGCTGTCCTCCGGGGCCGCGCCGGCCGCCGCCGCCACCCTGCAGCTCACCG
TCCTGCACCGCGCGTTGCTCGGTCTCGATAAGTTCCTGGGCCGCGCCGAGGTGGACCTGCGGGAGCTGCA
CCGGGACCAGGGCCGCAGGAAGAAGCAATGGTACACCCTGAAGTCCAAACCCGGGAAGAAGGACAAAGAG
CGCGGGGAAATCGAGGTCGACATCCAGTTTATGAGGAATAACATGACGGCCAGCATGTTTGACCTCTCCA
TGAAAGACAAGTCCCGGAATCCATTTGGAAAACTGAAGGACAAGATCAAAGGGAAGAATAAGGACAGCGC
CTCGGATACCGCCTCGGCCATCGTCCCCAGCGTGACACCCTCAGTCGACAGTGACGATGAGTCCTTCTCG
AAAGACAAGAAAAAGAAGTCAAAGATCAAGACTTTGTTTTCCAAGTCGAGTCTGCAGAAGACGCCCCTCT
CCCAGTCCATGTCTGTCCTGCCCACTTCCAAGTCAGACAAAGTTCTGTTGCGGGCCGGAGACTTCCAGTC
CCAGTGGGACGATGACGCCCATGAGGATGAGTCCTCCTCCGCCTCGGATGTCATGTCTCACAAGCGAACA
TCCAGTACAGACCAACAACCGAACCAGTCCAACTTCAGCCTTCCCAAGAAAGAGGGGCTTTCCTTCCTTG
GGGGCCTCCGGTCCAAGAATGACTCTCTTTCCCGCTCTACCGTCTGTATCAACGGGAACCACGTTTACAT
GGAGCAGCCGGAGGCCAGGAGTGAGATCAGAGAGAGCAGCCCTTCTAATTCCCCATCCCCGCAGGGCTTC
AGGAGGAAGCATTTGTTCTCGTCCACTGAAAACCTGGCTGCCCGCTCTCCCAAGGAACCAGGGGAAGGAG
GCGGCACATCTTCTGACAGGCGACTGTCCGACTCTTCCACCAAGGATTCCATGAAGTCCATGTCTTTGCC
ATCCTACCGGCCTCTGACCAGTGGGGACAATAGAGAGAGCATGTCTCCAGCAAACGTGGAGGCTGCCAGA
GAGACAAAAGACAGCAAGAAACAGGAGAGCAAGAAGTCCTCTTTGCTTTCTCTGGTGACGGGAAAGAGGG
ATGCGGCGGCTAAAGGCAGTGAAAGCGAACCTCTTCCCACTGTCTCAGAGAAAGAGAAGGAGAGGAAAGG
CGCGCTCGTGGAAGCCCAGCTGCGGGAGGAAGACCTCATGAGAAGGCCTGAGAAAGATGCTCTACCTGTT
GCCTCCCAGTGGGGCAGCTCCTTGAACCCCTTTGAGGACGTGCAGATCTCAGACCCGGGAGCCACCACGG
AGTCCAGGTCGGAACCGAAACCACCAGTTCCTGCGGCCAGGGTTCCCCAGACCAAGGCTGTGAAGCCGAG
ACTGGAAGTTTCTCCAGAGGCTCAGCCCAAAGCCAGGCTTCCCTCCCCCGACTCTGCTCTCTTTGCCCCC
TTTCCCTCTGACTCTATTCAGCCTCCTGTCCTTTCCGACTTGAGATGTGACTCAGAGACACAGTTCTCTG
AAAGTCCTTCTGCCTCCTCTTTCTTGTCCCCCTTAGCAGCTCCTATCTCCACATCCACTCCAGTCGAGCC
CTGGCCCACAGGCCAGGGTGAGGCCGATGCTGAAAAACCTTCCTTGCTCCTCAGAGCAGTCCCTAGTTTA
ACACCGGCTGCAAACACTGGTTCTTCTGCCTCGGGATCACCTTGTGAACAACTTCCTACACCTGTGCGGA
AGGGGACGGAAGAGGCGTCAGGGGACACAAGGAAGGAAGCTGGCAGTGATGAATCGGGAAAGACCCTCAT
GACAGAGTGTGTGTCTTCTGTGGATAATGTTCACGATGGCGGAATGACTACAGCAGGGGAAGAAGCAGCG
CCCCCTCTTCTAGAGGACGAGGCCTCCTCGTTTCACCGCATCGCACAGAAACACGAGGGGATGCATCAGA
ATGCCAGCGGAGGGCAGAAGAAGGGCAAGAAGCGCGTGTCTTTTTCTGAACAGCTTTTTGTGGAAGAAGA
AACAGAAGGACCCACTAGGCTTGAGGAGGAGGACAGAGGTCATGCCCAGCAGCTGACACAGGAAGGGCCT
GTTGCTGGAAGCGTGCTCCGTGCAGGGTCTCCAGAGTCTCCCCACACAGAAGGCACAGGACAGGAACCTG
TGACCGCAGAAGCTCAGCCTAACATTTCTTCTGAAGGCAAGTGTTTCCCGGAAGGCCCCACAAGTGAAGC
CAGCCCAGCAAGAGGTACCCAGCCTTTGATGGATGAGAAGGATGACCTCATGGCTCCCTGTCAGAGCAAA
GCCAGCGATCATGAAGGCCTGCTCTCTAACCCCCTGAGTGACCTTCCGTCCGCCTCGGATGTGAAATCTC
CCATCATAGCTGATCTGAGCTTGTCTCTCCCGTCCATTCCTGAAGTGGCATCGGATGATGAAAGAGTCGA
TGAGGTTGGAGATGGAGGAAAGGCAGAGAAGTTGGTTGATCTAGAAGCAGGAGTTTCACCCTGGAACGTG
TCACATTCCATCCTGGAGACGTCAGGAAGGTCTAGTGGCAGGGCAGGTGAATCAGTGCCCACAGAGAATC
AGTGTGACTTCAGGCCCCAGGTTCGCTCAAGTGAGAATGAAGAGCTACCAGGCCCTGGCACTGTCGAGGA
AGAGAAGCTGATAGGAGGTGAGAAGCCAGCTTCACCTCTGTGCGTATCCCAGGACTCTTCTGTGCCCAGC
CCCTCAGTCGCTGAGACCTTTCCCGCCGCATACTCTTCCCCCAGTTCTCCACCTTCCGACACTCACCACA
CCAGTGAAGCAGAATCGCAAAAACAAGCAACGGCAGACGTCTCCACTAGTAGAGCTGAGAATTTTGGCAA
GAAGAAGCCACTTCTACAAGCCTGGGTTACACCCTCAGAGATACATCCAACCCCAGCTTTGCCAAGCGCA
GGAGCTGGGGCAGCCAAGCACAGGCCTCACCCTGTGAAGCCCATGAACACAACAGCCACCAAGATTGCAA
ACTCTAGTTTGGGAACCGCCACCATCATCACTGAGAACCTGATCAGCGAGGCCCTCATGAAGAAATACCA
GCCCTCGGATCCCGCCTTTGCCTACGCGCAGCTGACCCACGATGAGCTGATCCAGCTAGTCCTCAAACAG
AAGGAGACCATCAGCAAGAAGGAGTTTCAGGTGCGGGAGCTGGAGGACTACATCGACAACCTGCTAGTCA
GAGTCATGGAGGAGACCCCCAACATCCTCCGAGTGCCGGCGCAGATGGGCAAGAAGGCCGGAAAGATGTA
A

Translation (1166 aa):
MSLAASAGRGPGTMWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEA
TFELPPLLSSGAAPAAAATLQLTVLHRALLGLDKFLGRAEVDLRELHRDQGRRKKQWYTLKSKPGKKDKE
RGEIEVDIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDSASDTASAIVPSVTPSVDSDDESFS
KDKKKKSKIKTLFSKSSLQKTPLSQSMSVLPTSKSDKVLLRAGDFQSQWDDDAHEDESSSASDVMSHKRT
SSTDQQPNQSNFSLPKKEGLSFLGGLRSKNDSLSRSTVCINGNHVYMEQPEARSEIRESSPSNSPSPQGF
RRKHLFSSTENLAARSPKEPGEGGGTSSDRRLSDSSTKDSMKSMSLPSYRPLTSGDNRESMSPANVEAAR
ETKDSKKQESKKSSLLSLVTGKRDAAAKGSESEPLPTVSEKEKERKGALVEAQLREEDLMRRPEKDALPV
ASQWGSSLNPFEDVQISDPGATTESRSEPKPPVPAARVPQTKAVKPRLEVSPEAQPKARLPSPDSALFAP
FPSDSIQPPVLSDLRCDSETQFSESPSASSFLSPLAAPISTSTPVEPWPTGQGEADAEKPSLLLRAVPSL
TPAANTGSSASGSPCEQLPTPVRKGTEEASGDTRKEAGSDESGKTLMTECVSSVDNVHDGGMTTAGEEAA
PPLLEDEASSFHRIAQKHEGMHQNASGGQKKGKKRVSFSEQLFVEEETEGPTRLEEEDRGHAQQLTQEGP
VAGSVLRAGSPESPHTEGTGQEPVTAEAQPNISSEGKCFPEGPTSEASPARGTQPLMDEKDDLMAPCQSK
ASDHEGLLSNPLSDLPSASDVKSPIIADLSLSLPSIPEVASDDERVDEVGDGGKAEKLVDLEAGVSPWNV
SHSILETSGRSSGRAGESVPTENQCDFRPQVRSSENEELPGPGTVEEEKLIGGEKPASPLCVSQDSSVPS
PSVAETFPAAYSSPSSPPSDTHHTSEAESQKQATADVSTSRAENFGKKKPLLQAWVTPSEIHPTPALPSA
GAGAAKHRPHPVKPMNTTATKIANSSLGTATIITENLISEALMKKYQPSDPAFAYAQLTHDELIQLVLKQ
KETISKKEFQVRELEDYIDNLLVRVMEETPNILRVPAQMGKKAGKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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