NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40206.1 Public Mus musculus 8 Pnpla6 23 108 98 CCDS HistoryNCBI Gene:50767Re-query CCDS DB by CCDS ID:40206.1Re-query CCDS DB by GeneID:50767See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004681.13 ENSMUSP00000004681.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004681.13Link to Ensembl Protein Viewer:ENSMUSP00000004681.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004681Re-query CCDS DB by Protein ID:ENSMUSP00000004681
Original member Current member EBI ENSMUST00000111070.3 ENSMUSP00000106699.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111070.3Link to Ensembl Protein Viewer:ENSMUSP00000106699.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111070Re-query CCDS DB by Protein ID:ENSMUSP00000106699
Original member NCBI NM_015801.2 NP_056616.2 Updated not alive Link to Nucleotide Sequence:NM_015801.2Link to Protein Sequence:NP_056616.2Re-query CCDS DB by Nucleotide ID:NM_015801Re-query CCDS DB by Protein ID:NP_056616
Current member NCBI NM_015801.3 NP_056616.2 Accepted alive Link to Nucleotide Sequence:NM_015801.3Link to Protein Sequence:NP_056616.2Re-query CCDS DB by Nucleotide ID:NM_015801Re-query CCDS DB by Protein ID:NP_056616Link to BLAST:NP_056616.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056616.2 1327 Q3TRM4-3 1327 100% 0 0

Chromosomal Locations for CCDS 40206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3516723 3516749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3517077 3517164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3517325 3517407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3517558 3517655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3521275 3521415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3521508 3521667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3522101 3522181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3522277 3522405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3522588 3522668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3522759 3522924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3523258 3523341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3523758 3523867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3523999 3524166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3524252 3524329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3530962 3531167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3531429 3531560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3531638 3531761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3532003 3532116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3532352 3532427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3534530 3534670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3534832 3534895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3535462 3535630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3535820 3536002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3536543 3536661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3536863 3537019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3537249 3537365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3537451 3537520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3537969 3538085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3541291 3541592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3542298 3542414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3542845 3542941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3543067 3543176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3543954 3544028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3984 nt):
ATGGAGGCCCCACTGCAAACCGGAATGGTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGTGCTGGTCA
CCGCCGTGCTCATCCTCTTGGTGGTGCGAAGGCTGCGGGTGCAGAAAACTCCAGCCCCGGAGGGTCCCCG
GTATCGGTTCCGGAAGCGGGACAAAGTGCTTTTCTATGGCCGGAAGATTATGCGGAAGGTGTCACAGTCC
ACTTCTTCCCTGGTGGACACATCAGTCTCCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGAAGATGC
TTAACATTGCCAAGAAGATCTTACGTATCCAAAAGGAGACTCCGACCCTACAACGGAAGGAGCCCCCACC
TTCAGTGCTGGAGGCTGACCTCACAGAGGGAGACCTGGCCAATTCCCACCTACCCTCTGAGGTACTCTAC
ATGCTTAAGAATGTTCGGGTGCTAGGTCACTTTGAGAAGCCGCTCTTCCTGGAGCTCTGCCGGCACATGG
TCTTCCAGCGTCTCGGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGT
TCAAGATGGGCTGCTGGAGCTCTGCCTACCAGGGCCTGATGGGAAGGAGTGTGTGGTGAAGGAGGTGGTT
CCTGGAGACAGCGTCAACAGCCTTCTGAGCATCCTTGATGTCATCACGGGTCACCAGCATCCCCAGCGGA
CTGTGTCAGCCAGGGCTGCACGGGACTCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCTGCTGTCTT
CACCAAGTACCCTGAGAGTTTGGTGCGAGTGGTACAGATCATCATGGTAAGGCTGCAGAGAGTCACCTTC
CTGGCGCTTCACAATTACCTGGGTCTGACCAATGAACTCTTCAGTCATGAGATCCAGCCCCTACGCCTTT
TCCCCAGCCCCGGCCTCCCGACCCGAACCAGCCCTGTCCGTGGCTCTAAACGGGTAGTCAGCACCTCAGG
TACTGAGGACACCTCAAAGGAGACCTCTGGCCGGCCCCTGGACTCCATTGGAGCTCCTCTGCCTGGACCT
GCAGGGGATCCCGTGAAGCCCACATCCTTAGAAGCACCCCCAGCCCCGTTACTGAGCCGCTGCATCTCCA
TGCCAGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTCTGATTTTGACATGGCCTATGAACGTGGACG
GATATCTGTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAGACAGCATCCCCTAGGACCCCCACTCAG
GAGCTCCGGGAGCAGCCAGCGGGTGCCTGTGAATATAGCTACTGTGAGGATGAGTCAGCCACAGGCGGAT
GTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCAA
GCTGATGCGGATTGAGGACCCCTCTCTACTGAACAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCACC
ATCATAGCCCGCCAAGGGGACCAGGATGTGAGCCTGCACTTTGTGCTCTGGGGCTGCCTGCACGTGTACC
AGCGCATGATTGACAAGGCTGAGGAAGTGTGCCTATTTGTGGCACAGCCAGGGGAGCTGGTGGGGCAACT
GGCGGTGCTCACTGGGGAACCTCTCATCTTCACACTACGTGCCCAGAGAGACTGCACCTTCCTGCGGATC
TCCAAATCCCACTTCTATGAGATCATGCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTGG
CTGCTAGAATGTCCCCCTTCGTGCGCCAGATGGACTTTGCCATTGACTGGACAGCTGTGGAGGCTGGTCG
TGCGCTCTACAGGCAGGGAGACCGCTCCGACTGCACCTACATTGTACTCAATGGACGTCTCCGTAGTGTC
ATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGGGGAGTATGGTCGAGGGGATCTCATTGGCGTGGTGG
AGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACACTGAGCTGGCCAAGCTTCC
CGAGGGCACCTTAGGCCACATCAAACGTCGGTACCCACAGGTTGTGACCCGCCTTATTCATCTGCTAAGC
CAGAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGGCTCCGGGCTCAGTGTTCCGCAGC
ACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGCTATCCTCCCTGTGTGTGCTGAGGTGCC
CATGATGGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCACGCTCCTCCTTAACAGT
GACGTCATCCGGGCACTCCTGGGGGCTTCAGCACTGGATAGCATTCAAGAATTCCGGCTGTCAGGGTGGT
TGGCCCAGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAACTGACACATCCCTGACGCCTTGGACCGT
CCGTTGTCTGCGCCAGGCCGACTGCATCCTCATTGTGGGCCTGGGGGACCAGGAACCCACTGTTGGCCAG
CTGGAGCAAATGTTAGAGAACACTGCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCACCGGGAGGAAG
GCCCTGGTCCCACGCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTGCTCAGGGCACCTGCACCTGCG
CTGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCGAAACTTCATGAGCTGTATGAGAAGGTTTTCTCC
AGGCGTGCAGACCGTCACAGCGACTTCTCCCGCTTGGCACGAGTACTCACAGGAAACACTATTGCTCTGG
TGCTGGGTGGGGGCGGAGCCAGAGGCTGCTCGCATATTGGGGTGCTGAAGGCATTAGAGGAGGCAGGAGT
CCCAGTCGACCTTGTGGGAGGCACATCCATAGGTTCCTTCATTGGGGCCTTGTATGCCGAGGAACGCAGC
GCCAGCCGAACTAAACAACGAGCCCGGGAGTGGGCCAAGAGCATGACTTCTGTACTGGAGCCTGTATTGG
ACCTCACATATCCTGTCACCTCCATGTTTACTGGCTCAGCCTTTAACAGAAGTATCCACCGTGTCTTCCA
GGATAAGCAGATTGAGGACCTGTGGCTGCCTTACTTCAATGTGACCACAGACATCACTGCCTCTGCCATG
CGCGTCCACAAAGATGGCTCCCTGTGGCGGTATGTACGTGCCAGCATGACGCTCTCGGGCTACCTACCCC
CGCTGTGCGACCCAAAGGATGGGCACCTGCTCATGGATGGTGGCTACATCAACAACCTGCCAGCGGATAT
TGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGAGACAGATCTCAGC
ACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAAAGGCTAAACCCCTGGGCAGACAAGGTAA
AGGTTCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTACGTGTCCTGTGTGCGGCAGCTAGAAGTCGT
CAAGTCCAGCTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTTGGAAAG
TTTGACCAGATCTATGATGTGGGTTACCAGTATGGGAAGGCTGTCTTTGGAGGCTGGACCCGTGGTGAAG
TCATTGAGAAAATGCTCACAGACCGGAGATCTACAGACCTTAATGAGAGTCGCCGTGCAGATATACTTGC
CTTCCCAAGTTCTGGGTTCACTGACTTGGCTGAGATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTC
TCTGATGGCTGTGCTGATGGGGAGGAGTCGGATTGCTTGACAGAGTATGAGGAAGATGCAGGACCAGACT
GCTCAAGAGATGAAGGGGGCTCCCCTGAGGGTGCCAGCCCTAGCACTGCCTCAGAGGTGGAAGAAGAGAA
GTCCACACTCCGGCAACGACGCTTTCTGCCTCAGGAGACTCCCAGCTCAGTCGCAGATGCCTGA

Translation (1327 aa):
MEAPLQTGMVLGVMIGAGVAVLVTAVLILLVVRRLRVQKTPAPEGPRYRFRKRDKVLFYGRKIMRKVSQS
TSSLVDTSVSTTSRPRMKKKLKMLNIAKKILRIQKETPTLQRKEPPPSVLEADLTEGDLANSHLPSEVLY
MLKNVRVLGHFEKPLFLELCRHMVFQRLGQGDYVFRPGQPDASIYVVQDGLLELCLPGPDGKECVVKEVV
PGDSVNSLLSILDVITGHQHPQRTVSARAARDSTVLRLPVEAFSAVFTKYPESLVRVVQIIMVRLQRVTF
LALHNYLGLTNELFSHEIQPLRLFPSPGLPTRTSPVRGSKRVVSTSGTEDTSKETSGRPLDSIGAPLPGP
AGDPVKPTSLEAPPAPLLSRCISMPVDISGLQGGPRSDFDMAYERGRISVSLQEEASGGPQTASPRTPTQ
ELREQPAGACEYSYCEDESATGGCPFGPYQGRQTSSIFEAAKRELAKLMRIEDPSLLNSRVLLHHAKAGT
IIARQGDQDVSLHFVLWGCLHVYQRMIDKAEEVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRI
SKSHFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALYRQGDRSDCTYIVLNGRLRSV
IQRGSGKKELVGEYGRGDLIGVVEALTRQPRATTVHAVRDTELAKLPEGTLGHIKRRYPQVVTRLIHLLS
QKILGNLQQLQGPFPGSGLSVPQHSELTNPASNLSTVAILPVCAEVPMMAFTLELQHALQAIGPTLLLNS
DVIRALLGASALDSIQEFRLSGWLAQQEDAHRIVLYQTDTSLTPWTVRCLRQADCILIVGLGDQEPTVGQ
LEQMLENTAVRALKQLVLLHREEGPGPTRTVEWLNMRSWCSGHLHLRCPRRLFSRRSPAKLHELYEKVFS
RRADRHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIGALYAEERS
ASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTGSAFNRSIHRVFQDKQIEDLWLPYFNVTTDITASAM
RVHKDGSLWRYVRASMTLSGYLPPLCDPKDGHLLMDGGYINNLPADIARSMGAKTVIAIDVGSQDETDLS
TYGDSLSGWWLLWKRLNPWADKVKVPDMAEIQSRLAYVSCVRQLEVVKSSSYCEYLRPSIDCFKTMDFGK
FDQIYDVGYQYGKAVFGGWTRGEVIEKMLTDRRSTDLNESRRADILAFPSSGFTDLAEIVSRIEPPTSYV
SDGCADGEESDCLTEYEEDAGPDCSRDEGGSPEGASPSTASEVEEEKSTLRQRRFLPQETPSSVADA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH