NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40195.1 Public Mus musculus 7 Tssc4 23 108 98 CCDS HistoryNCBI Gene:56844Re-query CCDS DB by CCDS ID:40195.1Re-query CCDS DB by GeneID:56844See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060433.9 ENSMUSP00000056582.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060433.9Link to Ensembl Protein Viewer:ENSMUSP00000056582.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060433Re-query CCDS DB by Protein ID:ENSMUSP00000056582
Original member Current member EBI ENSMUST00000177841.7 ENSMUSP00000137399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177841.7Link to Ensembl Protein Viewer:ENSMUSP00000137399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177841Re-query CCDS DB by Protein ID:ENSMUSP00000137399
Original member Current member NCBI NM_001115085.1 NP_001108557.1 Accepted alive Link to Nucleotide Sequence:NM_001115085.1Link to Protein Sequence:NP_001108557.1Re-query CCDS DB by Nucleotide ID:NM_001115085Re-query CCDS DB by Protein ID:NP_001108557Link to BLAST:NP_001108557.1
Original member Current member NCBI NM_020285.2 NP_064681.1 Accepted alive Link to Nucleotide Sequence:NM_020285.2Link to Protein Sequence:NP_064681.1Re-query CCDS DB by Nucleotide ID:NM_020285Re-query CCDS DB by Protein ID:NP_064681Link to BLAST:NP_064681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108557.1 317 Q9JHE7-1 317 100% 0 0
NP_064681.1 317 Q9JHE7-1 317 100% 0 0

Chromosomal Locations for CCDS 40195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143069957 143070910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGCGGAGACAGAGGCTGGCCTGGAGGCTGATGAACCCACCGAGGATGACACCCTGCCTTCTGACACCG
TCTCCCTCAGCGACTCGGACTCGGACCTTAGCTTACCTAGTGGTGTGGAGGTCCAAGTGTTGTCCCCAGA
GAGGCTTTCGGAGGAGGGCCAGGAGGACTCCGGCCCTGAGGACCCTCCATCGCCCCCCACGGGCACCCTC
ACCACTGCAGTGCAGCCATTCCACCTCCGAGGCATGAGTTCTACCTTCTCCCAGCGCAGCCACAGCATCT
TTGATTGTCTGGAGAGTGCAGCCCGGCAGGCACCGTGCTCTGCTCCCCAAACCAGTGTGAGTGACAATGG
CAGCTTCAGGCGGCCCGTGACTCCCCCAAGTCAGACTCCAGCAAGGGGCCTGAGCAGAGTGCATGGGAAC
ACTGGCCCGACTAGGGTACTCCCAGTCCCTGACTATGTGTCACACCCTGAGCGTTGGACCAAATACAGTC
TGGAGGATGTGTCTGAAGCCAGTGAGCAGAGCAATCGTGATGCTGCCCTGGCCTTCCTGAGCTCTCGAAG
CCAGGTGTCCCACACAGACTATGTGCCTTCTTTCAACCAGGACCCCTCTAGCTGTGGGGAGGGAAGAGTG
GTCTTCACCAAACCAGTGAGGGACAGTGAGGCTAGGGCTGAGAGGAAGAGGGTCCTAAAGAAGGGGGTTG
GGTCAGGTGCGGGGGGTGAGGCCGCTGTGGAGCTAGCCCATCTCGCTGGACCTGAGGCTGAGGAATGGAG
TGGCCACCAGGGACAGCCAGAGGTGGTGGTACCTTCAGAAGCTGCCCATCCTGAGTCCTCATCAGGCCCC
ATAGGTGTGAAGGCTGTTGGTTTCCATGGCAGCAAGAAGCGGAGCAGAGACCACTTCCGGAACAGGGACG
GTAACCCTGGGGGGCCGGGGTCTGAGAGAGGACCCTCAGTTTGA

Translation (317 aa):
MAETEAGLEADEPTEDDTLPSDTVSLSDSDSDLSLPSGVEVQVLSPERLSEEGQEDSGPEDPPSPPTGTL
TTAVQPFHLRGMSSTFSQRSHSIFDCLESAARQAPCSAPQTSVSDNGSFRRPVTPPSQTPARGLSRVHGN
TGPTRVLPVPDYVSHPERWTKYSLEDVSEASEQSNRDAALAFLSSRSQVSHTDYVPSFNQDPSSCGEGRV
VFTKPVRDSEARAERKRVLKKGVGSGAGGEAAVELAHLAGPEAEEWSGHQGQPEVVVPSEAAHPESSSGP
IGVKAVGFHGSKKRSRDHFRNRDGNPGGPGSERGPSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH