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Report for CCDS3984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3984.1 Public Homo sapiens 5 CENPK 24 110 108 CCDS HistoryNCBI Gene:64105Re-query CCDS DB by CCDS ID:3984.1Re-query CCDS DB by GeneID:64105See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242872.7 ENSP00000242872.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000242872.7Link to Ensembl Protein Viewer:ENSP00000242872.3Re-query CCDS DB by Nucleotide ID:ENST00000242872Re-query CCDS DB by Protein ID:ENSP00000242872
Original member Current member EBI ENST00000396679.6 ENSP00000379911.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396679.6Link to Ensembl Protein Viewer:ENSP00000379911.1Re-query CCDS DB by Nucleotide ID:ENST00000396679Re-query CCDS DB by Protein ID:ENSP00000379911
Original member Current member EBI ENST00000514814.5 ENSP00000422421.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514814.5Link to Ensembl Protein Viewer:ENSP00000422421.1Re-query CCDS DB by Nucleotide ID:ENST00000514814Re-query CCDS DB by Protein ID:ENSP00000422421
Original member Current member NCBI NM_001267038.2 NP_001253967.1 Accepted alive Link to Nucleotide Sequence:NM_001267038.2Link to Protein Sequence:NP_001253967.1Re-query CCDS DB by Nucleotide ID:NM_001267038Re-query CCDS DB by Protein ID:NP_001253967Link to BLAST:NP_001253967.1
Original member Current member NCBI NM_022145.5 NP_071428.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022145.5Link to Protein Sequence:NP_071428.2Re-query CCDS DB by Nucleotide ID:NM_022145Re-query CCDS DB by Protein ID:NP_071428Link to BLAST:NP_071428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001253967.1 269 Q9BS16 269 100% 0 0
NP_071428.2 269 Q9BS16 269 100% 0 0

Chromosomal Locations for CCDS 3984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 65518475 65518633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65521475 65521528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65528452 65528578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65528919 65529017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65529117 65529199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65542802 65542848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65551564 65551636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65552493 65552549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 65554797 65554907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGAATCAGGAGGATCTAGATCCGGATAGTACTACAGATGTGGGAGATGTTACAAATACTGAAGAAGAAC
TTATTAGAGAATGTGAAGAAATGTGGAAAGATATGGAAGAATGTCAGAATAAATTATCACTTATTGGAAC
TGAAACACTCACCGATTCAAATGCTCAGCTATCATTGTTAATTATGCAAGTAAAATGTTTAACCGCTGAA
CTCAGTCAATGGCAGAAAAAAACACCTGAAACAATTCCCTTGACTGAAGACGTTCTCATAACATTAGGAA
AAGAAGAGTTCCAAAAGCTGAGACAAGATCTTGAAATGGTACTGTCCACTAAGGAGTCAAAGAATGAAAA
GTTAAAGGAAGACTTAGAAAGGGAACAACGGTGGTTGGATGAACAGCAACAGATAATGGAATCTCTTAAT
GTACTACACAGTGAATTGAAAAATAAGGTTGAAACATTTTCTGAATCAAGAATCTTTAATGAACTGAAAA
CTAAAATGCTTAATATAAAAGAATATAAGGAGAAACTCTTGAGTACCTTGGGCGAGTTTCTAGAAGACCA
TTTTCCTCTGCCTGATAGAAGTGTTAAAAAGAAAAAGAAAAACATTCAAGAATCATCTGTAAACCTGATA
ACACTGCATGAAATGTTAGAGATTCTTATAAATAGATTATTTGATGTTCCACATGATCCATATGTCAAAA
TTAGTGATTCCTTTTGGCCACCTTATGTTGAGCTGCTGCTGCGTAATGGAATTGCCTTGAGACATCCAGA
AGATCCAACCCGAATAAGATTAGAAGCTTTCCATCAGTAA

Translation (269 aa):
MNQEDLDPDSTTDVGDVTNTEEELIRECEEMWKDMEECQNKLSLIGTETLTDSNAQLSLLIMQVKCLTAE
LSQWQKKTPETIPLTEDVLITLGKEEFQKLRQDLEMVLSTKESKNEKLKEDLEREQRWLDEQQQIMESLN
VLHSELKNKVETFSESRIFNELKTKMLNIKEYKEKLLSTLGEFLEDHFPLPDRSVKKKKKNIQESSVNLI
TLHEMLEILINRLFDVPHDPYVKISDSFWPPYVELLLRNGIALRHPEDPTRIRLEAFHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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