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Report for CCDS39784.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39784.2 Reviewed, update pending Mus musculus 7 Ccdc9 23 108 98 CCDS HistoryNCBI Gene:243846Re-query CCDS DB by CCDS ID:39784.2Re-query CCDS DB by GeneID:243846See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 39784.1
The coding region has been updated to extend the N-terminus to by 1 codon to an upstream, in-frame AUG.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39784.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041010.14 ENSMUSP00000035597.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041010.14Link to Ensembl Protein Viewer:ENSMUSP00000035597.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041010Re-query CCDS DB by Protein ID:ENSMUSP00000035597
Original member NCBI NM_172297.1 NP_758501.2 Updated not alive Link to Nucleotide Sequence:NM_172297.1Link to Protein Sequence:NP_758501.2Re-query CCDS DB by Nucleotide ID:NM_172297Re-query CCDS DB by Protein ID:NP_758501
Current member NCBI NM_172297.2 NP_758501.3 Pending alive Link to Nucleotide Sequence:NM_172297.2Link to Protein Sequence:NP_758501.3Re-query CCDS DB by Nucleotide ID:NM_172297Re-query CCDS DB by Protein ID:NP_758501Link to BLAST:NP_758501.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758501.3 543 Q8VC31 543 100% 0 0

Chromosomal Locations for CCDS 39784.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16275649 16276107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16276202 16276295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16276494 16276629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16276727 16276773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16278357 16278538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16280598 16280771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16280858 16280941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16282357 16282605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16282752 16282850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16284271 16284375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16284495 16284500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGATGGCTACCACACTAGATTTGAAGTCAAAGGAGGAGAAGGATGCAGAATTGGACAAGAGGATCGAGG
CTCTTCGTCGGAAGAATGAGGCCCTCATCCGGCGCTACCAGGAGATTGAGGAGGATCGGAAAAAAGCTGA
ACTGGAGGGCGTGGCAGTGACAGCCCCCCGGAAGAGCCGCTCCATGGAGAAGGAGAATATGGCAGTGGAG
GAGAAGAGCCTGGGTCCCTCTCGGAGGACTCCTGGGACTCCTCGACCCCCAGGGGCCAGCAGAGGGGGCC
GGACCCATCCCCAGCAGGGAGGCCGGGCAGGCGTAGGCCGGGCATCCCAAGGCTGGGAGGATGGTGCTGG
GGAGCAGCTTCGAGGGGGTCCTGGGGGCCGGGGCCGGAGGGGCCGGGGCCGGGGATCCCCTCATCTCTTA
GGGGCAGGAGACAACTCAACCTCTGATCGAAAGTCTAAGGAGTGGGAGGAGCGGCGCAGGCAGAATATCG
AGAAGATGAATGAGGAGATGGAGAAGATTGCCGAATATGAGCGCAACCAGCGGGAAGGGGTGCTGGAGCC
CAACCCAGTACGCAACTTCCTGGATGATCCCCGACGTCGGGGTGGGCCCCTCGAGGAGTCTGAGAGGGAT
CGCCGGGAAGGCAGCCGCCGGCATGGACGCAACTGGGGAGGCTCAGATTTTGAGCGGGTGCGCTCTGGCT
TGGAACAGGAGCGACAGGGCCGCAGGGCTGGCCTGGGCAGTGGGGGCGACATGACGATGTCCATGACGGG
CCGGGAGAGGTCAGAGTACCTGCGCTGGAAGCAGGAGAGGGAGAAGATCGACCAGGAACGTCTGCAGCGA
CACCGCAAGCCCACCGGGCAGTGGCGGCGGGAGTGGGATGCCGAGAAGACCGATGGCATGTTCAAGGATG
GCCCAGCCCCTACCCATGAACTGTCCCACCGCTATGATGACCAAGCTTGGGCAAGACCACCTAAGCCTCC
CACTTTTGGAGAGTTCCTTTCTCAGCACAAAGCTGAAGTCAGCAGCCGCAGAAGGAGAAAGAACAGCCGA
CCTCAGGCCAAGGTGGCCCCTCGTGCCTATAGTGACCACGATAATCGCTGGGAGACAAGAGAGGAAGCTG
TGTCCTCGGCCCCCGAGTCCTCTCAGTCCATATCCCTGGAGGAGACACCCACACAGGCTTCTGAGACCCC
AGCTCCAGCTCATCGGCCTCCCGAGGAAGATGGTGAGGAAGATGTGGGGGAAGAGGAGGAGGGAGAAGAA
GAGGGGGAAGATGAGGAGGATGAAGAGTGGGAGGACGTGAGTGAAGATGTTACTGAGGAGGAGGAGGAAG
AGGAAGAAGAGTTTGAAGAGGATGAAGAGGGTCCTAAGGACCAGGAAGCAGCAACTGTTCCTGATCACCA
GCCTGAAGCTGAGCCTGCTGGGAAGCCCACCTGTGAGCAGGTGGACCCTGTGCCTGCCGGGTCCCAGGAG
TTGCTGTCCCCAGTCCCTGTTGAACCTCCCATCCCCTTCTCACCCTCTGAGGACCACCAGCCTGTGTCTG
ACTGGGGTGAGGAGATGGAACTGAATTCTCCCGGCACTGCCCACTTACCTGGTACCCACTCTTCGGGTGA
GGCCTGGCCTTTTGCGAATGCTTGA

Translation (544 aa):
MMATTLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKSRSMEKENMAVE
EKSLGPSRRTPGTPRPPGASRGGRTHPQQGGRAGVGRASQGWEDGAGEQLRGGPGGRGRRGRGRGSPHLL
GAGDNSTSDRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRGGPLEESERD
RREGSRRHGRNWGGSDFERVRSGLEQERQGRRAGLGSGGDMTMSMTGRERSEYLRWKQEREKIDQERLQR
HRKPTGQWRREWDAEKTDGMFKDGPAPTHELSHRYDDQAWARPPKPPTFGEFLSQHKAEVSSRRRRKNSR
PQAKVAPRAYSDHDNRWETREEAVSSAPESSQSISLEETPTQASETPAPAHRPPEEDGEEDVGEEEEGEE
EGEDEEDEEWEDVSEDVTEEEEEEEEEFEEDEEGPKDQEAATVPDHQPEAEPAGKPTCEQVDPVPAGSQE
LLSPVPVEPPIPFSPSEDHQPVSDWGEEMELNSPGTAHLPGTHSSGEAWPFANA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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