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Report for CCDS39347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39347.1 Public Mus musculus 5 Zfp68 23 108 98 CCDS HistoryNCBI Gene:24135Re-query CCDS DB by CCDS ID:39347.1Re-query CCDS DB by GeneID:24135See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085852.10 ENSMUSP00000083013.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085852.10Link to Ensembl Protein Viewer:ENSMUSP00000083013.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085852Re-query CCDS DB by Protein ID:ENSMUSP00000083013
Original member Current member NCBI NM_001044747.2 NP_001038212.1 Accepted alive Link to Nucleotide Sequence:NM_001044747.2Link to Protein Sequence:NP_001038212.1Re-query CCDS DB by Nucleotide ID:NM_001044747Re-query CCDS DB by Protein ID:NP_001038212Link to BLAST:NP_001038212.1

Chromosomal Locations for CCDS 39347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138606239 138607821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138611824 138611913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138612039 138612072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGCTGGAGAACTACAGCAACTTGCTGTTCTTGGGGCACTGCAAAACCAAACCGGAGCTGATCTTCAATT
TGGAGCAAAGACTTGGGTCATGGATTGTAGAAGCCTCACACCAGTGTGTCCCAGATTTCCAGAATATGAG
TACCCTGAATAAGAGCAGTCCAGATACCAAAGCAAGACACGTGTGGCAAGTTGCCCTCAACAGTGAAACA
TCAAAGGAGTTGGCTGGAATAGGGAATACTTGCAATGTGAGCACAAACCATATTTCAGATCAGACTATCA
AGAATGAGAACTCACTAGGAATGAGTCCTAGAAAGTTTATTCTGTGGAAGGACGTGTATCTCCACACTGA
TGCTGATGAGATAGAAGTTGGAGAAGAACCTGAAGATCTTAATGGAACTGCAGAATCTGTCACACACCCC
GAGCAAGTTAGTCTATACAGGTTTCAAAGGTCACAGAGTTACTTTCAAAGTCTGATACCAGGGAAATCCT
TCAACACAAAAGCAGTATTACTTACTCATAAGTTCAGTGAATATGCAAAATCCTTAGGTGATACAGCATT
TATTGACAAAGAGATGGCTCAGATAAGGGTGAAATCCTTTGAATGTAATGTATCAGAGATAAACTGTAGC
AAGTCTGACCTTAATGAAAATGAACCCACGCACATGGGAGAGAAACATTACAAATGTAGTAACTTTGAGA
ACCCTTTTATTATTGAATCATACCTTCCAAAACATAAGGGGCAGCATGAGAAGCTCTTTATCCAGAAGGA
ATATGAGTTTTCTCAGCAGTCAGAAGTGAGTCTTCATCAGAAAATCCGCAGAGGGAAAAAAACCTATGAA
TGTAAAATATGTGGCAAGTGCTTTTATTGGAAAACCAGCTTCAATAGACATCAGAGCACTCACACTGGTG
AGAAGCCCTATGAATGTACAGAATGCAGTAAAGCGTTCTGCCAGAAGTCACACCTCACTCAGCACCAGAG
AGTTCACACAGGCGAGAGACCATACATATGCTTTGAATGCAGGAAAGCTTTCTATCGTAAATCAGAGCTT
ACTGACCATCAGAGAATTCATACAGGTGAGAAGCCATATGAATGTAAGGAATGTGGGAAAGCTTTTTGCC
AAAAGCCCCAACTTACTCTACATCAGAGAATTCATACAGGTGAGAAGCCCTATGAGTGTGCAGAATGTGG
GAAAGCCTTCTCCACTAAGTCCTATTTAACTGTCCATCAGAGAACTCACACAGGTGAGAAACCTTACGAA
TGTACAGTATGTAGGAAGTCATTTATCTGTAAGTCAAGTTTCAGTCATCATTGGAGAACTCATACAGGTG
AGAAACCTTACGAATGTAAGCAGTGTATGAAGACCTTCTACCGTAAGTCAGGCCTGACTCGACACCAGAG
AACTCACACAGGTGACAAACGCTATGAATGTCAATTATGTCAGAAAGCTTTTTACTGCACTTCACACCTC
ATTGTACATCAGCGAACTCATACGGGTGAGAAACCTTATGAATGTAAGGAATGTAGGAAAGCTTTCTATG
ATAAGTCAAACCTTAAGCGGCATCAGAAGATTCATAGTATGAAGAAAGCCTCTGAGAGCAAACAGTCTAA
CAACTTTTTTCTGAGTGATACTTCTCAACATCAGACGATGTATTATGAATATGAAGAATGCAAGAAAGCT
TTCCACCAGAAAACAAACTTTACTTAA

Translation (568 aa):
MLENYSNLLFLGHCKTKPELIFNLEQRLGSWIVEASHQCVPDFQNMSTLNKSSPDTKARHVWQVALNSET
SKELAGIGNTCNVSTNHISDQTIKNENSLGMSPRKFILWKDVYLHTDADEIEVGEEPEDLNGTAESVTHP
EQVSLYRFQRSQSYFQSLIPGKSFNTKAVLLTHKFSEYAKSLGDTAFIDKEMAQIRVKSFECNVSEINCS
KSDLNENEPTHMGEKHYKCSNFENPFIIESYLPKHKGQHEKLFIQKEYEFSQQSEVSLHQKIRRGKKTYE
CKICGKCFYWKTSFNRHQSTHTGEKPYECTECSKAFCQKSHLTQHQRVHTGERPYICFECRKAFYRKSEL
TDHQRIHTGEKPYECKECGKAFCQKPQLTLHQRIHTGEKPYECAECGKAFSTKSYLTVHQRTHTGEKPYE
CTVCRKSFICKSSFSHHWRTHTGEKPYECKQCMKTFYRKSGLTRHQRTHTGDKRYECQLCQKAFYCTSHL
IVHQRTHTGEKPYECKECRKAFYDKSNLKRHQKIHSMKKASESKQSNNFFLSDTSQHQTMYYEYEECKKA
FHQKTNFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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