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Report for CCDS38244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38244.1 Public Mus musculus 2 Slc4a11 23 108 98 CCDS HistoryNCBI Gene:269356Re-query CCDS DB by CCDS ID:38244.1Re-query CCDS DB by GeneID:269356See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099362.10 ENSMUSP00000096963.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099362.10Link to Ensembl Protein Viewer:ENSMUSP00000096963.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099362Re-query CCDS DB by Protein ID:ENSMUSP00000096963
Original member Current member NCBI NM_001081162.1 NP_001074631.1 Accepted alive Link to Nucleotide Sequence:NM_001081162.1Link to Protein Sequence:NP_001074631.1Re-query CCDS DB by Nucleotide ID:NM_001081162Re-query CCDS DB by Protein ID:NP_001074631Link to BLAST:NP_001074631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074631.1 862 A2AJN7 862 100% 0 0

Chromosomal Locations for CCDS 38244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130684434 130684503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130684612 130684781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130684858 130685053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130685231 130685404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130685495 130685663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130685749 130685855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130686031 130686289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130686884 130686957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687159 130687291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687371 130687484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687563 130687688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687787 130687880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130687954 130688157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130690833 130690956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130691390 130691471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130691549 130691780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130692029 130692078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130692166 130692330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130696041 130696086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGTCACAGAATGAACACTGTCAGGACTCCGGTGAATACTTCTCAGCCGGCACTCAGGGATACTTCAAGA
AC
AACATGGAGGATAACCTTGAAGTCCGGGAAGACAGCCTAGGGGATGAGGTCTTTGACACCGTCAACTC
C
TCCATTGTGTCTGGCGAGAGCATCCGGTTTTTTGTCAATGTCAACCTTGAAGTGCAGCCCTCCAAATCT
G
AC
TTAGAAGCTGCAACGGGTGGCTGCGTGCTCTTACACACCTCTCGCAAGTATCTGAAATTGAAGAACT
TT
GAGGAAGAGGTCCGTGCACACCGGGACCTGGATGGCTTCCTGGCCCAGGCCAGCATCATCCTGAATGA
G
ACAGCTACCTCACTGGATGATGTCCTCCGAACTATGCTAAACCGCTTTGCCCTGGACCCTAACCACGCA
GAA
CCTGACTGTGACCTGGACCTGCTCATGGCTAAGCTCTTTACAGATGCTGGAGCCCCTATGGAGAGCA
AG
GTCCACCTGCTGTCAGATACCATCCAGGGAGTCACTGCCACTGTCCGAGGGGTGCAGTACGAGCAGTC
T
TGGCTCTGCATCATCTGTACCATGAAGACCCTACAGAAACGGCATGTGTGCATCAGCCGCCTGGTTCGA
CCA
CAGAACTGGGGGGAGAACTCCTGTGAGGTTCGCTTTGTCATCCTGGTGCTGGCCCCACCCAAGATGA
AA
AGCACCAAGACTGCAATGGAGGTGGCACGCACCTTTGCCACCATGTTCTCAGACATCACCTTCCGCCA
G
AAGCTCCTGAAGACTCGCACAGAGGAAGAATTCAAGGAGGCTCTGGTGCATCAGAGACAGCTGCTCACC
ATG
ATGATGCCAAGAGCCGCAGGGCACAGCATGAGCTCCCTCCATACTCACAGACACCCTCAGCCCCCGA
AA
TGCAAGGACTTTTTCCCTTTTGGAAAGGGCATCTGGATGGATATCATGCGCAGGTTTCCTGTGTACCC
A
ATGGACTTCACTGATGGCATCATTGGGAAAAGCAAGAGCGTGGGCAAATATGTCACCACCACACTCTTC
CTC
TACTTCGCCTGCCTCCTACCGACCATTGCTTTTGGATCCCTCAACGATGAGAACACAAACGGGGCCA
TC
GATGTGCAGAAGACCATAGCTGGACAGAGCATCGGAGGCCTCTTGTATGCACTGTTCTCTGGGCAGCC
C
CTGGTGATACTGTTGACAACCGCACCCCTGGCCATCTACACCCAGGTGATTCGAGTCATCTGTGATGAC
TAC
AATCTGGACTTCAACGCCTTCTATGCATGGACGGGCCTGTGGAACAGTTTCTTCCTTGCACTTTATG
CC
TTCCTCAACCTCAGCCTGCTTATGAATCTCTTTAAGAGGTCTACAGAGGAAATCATTGCTCTGTTCAT
T
TCCATCACGTTTGTGCTGGATGCTGTCAAGGGCATGGTCAAAATCTTCGGGAAGTACTACTATGGTCAC
CAC
TACCACACAAAAAGGACTTCCTCCTTGGTGAGCCTGTTGGGCATTGGCAGAAGCCCCAACAGCAGTC
TC
CACACTGCACTCAACGCCAGCCTCTTGGCCAGCCCCGTAGAGATGGCCACAACCAGCAGCCCCGGCAG
C
ACACACTCGGGCCAGGCTACAGCGGTGCTCAGCCTCCTCATCATGTTGGGCACACTCTGGCTAGGCTAC
ACC
CTCTACCAGTTCAAGAAAAGCCCCTACCTGCACCCATGTGTGCGTGAGACCCTGTCTGACTGTGCCC
TG
CCCATCGCCGTGCTCTCCTTCTCCCTCATCGGCTCCTATGGCTTCCAGGAAATTGAGATGAGCAAGTT
C
CGGTATAACCCCAGCGAGAGCCTTTTTGAGGTGGCACAGATCCACTCTCTGTCCTTCAAGGCCATCGGC
AGT
GCCATGGGTCTTGGTTTCCTGCTCTCCTTGCTTTTCTTCATTGAGCAGAACCTGGTGGCGGCCCTGG
TC
AATGCACCAGAGAACAGGCTGGTGAAGGGCACTGCCTATCACTGGGATCTCCTGCTACTTGCCATCAT
C
AATACGGGGCTGTCTCTGTTTGGGCTACCCTGGATCCACGCCGCCTATCCCCACTCCCCTCTGCATGTG
CGG
GCACTGGCCTTAGTGGAGGAACGCGTGGAGAATGGGCACATTTATGAAACGATTGTGGATGTTAAGG
AG
ACTCGGCTGACGGCGCTGGGTGCCAGTGTCCTGGTGGGCCTGTCCTTGCTGCTGCTGCCATTCCCTCT
G
CAGTGGATCCCCAAGCCTGTGCTGTATGGGCTCTTTCTGTACATTGCACTGACCTCCCTGGACGGCAAC
CAG
CTCTTCTCGCGTGTGGCCCTGCTGCTCAAGGAGCAGACATCATACCCACCCACACACTACATCCGGA
GA
GTGCCCCAAAGGAAGATCCACTACTTCACAGGCCTGCAGATCCTGCAGCTGCTACTGCTCTGTGCCTT
C
GGCATGAGCTCCCTGCCCTACATGAAGATGGTCTTTCCCCTCATCATGATTGCCATGATTCCAATCCGC
TAC
AATCTGCTACCCCGAATCATTGAGGCCAAGTACTTGGATGTCATGGATGCTGAGCATAGGCCCTGA


Translation (862 aa):
MSQNEHCQDSGEYFSAGTQGYFKNNMEDNLEVREDSLGDEVFDTVNSSIVSGESIRFFVNVNLEVQPSKS
D
LEAATGGCVLLHTSRKYLKLKNFEEEVRAHRDLDGFLAQASIILNETATSLDDVLRTMLNRFALDPNHA
E
PDCDLDLLMAKLFTDAGAPMESK
VHLLSDTIQGVTATVRGVQYEQSWLCIICTMKTLQKRHVCISRLVR
P
QNWGENSCEVRFVILVLAPPKM
KSTKTAMEVARTFATMFSDITFRQKLLKTRTEEEFKEALVHQRQLLT
M
MMPRAAGHSMSSLHTHRHPQ
PPKCKDFFPFGKGIWMDIMRRFPVYPMDFTDGIIGKSKSVGKYVTTTLF
L
YFACLLPTIAFGSLNDENTNGAI
DVQKTIAGQSIGGLLYALFSGQPLVILLTTAPLAIYTQVIRVICDD
Y
NLDFNAFYAWTGLWNSFFLALYAFLNLSLLMNLFK
RSTEEIIALFISITFVLDAVKGMVKIFGKYYYGH
H
YHTKRTSSLVSLLGIGRSPNSSLHTALNASLLASPVEMATTSSPGSTHSGQATAVLSLLIMLGTLWLGY
T
LYQFKK
SPYLHPCVRETLSDCALPIAVLSFSLIGSYGFQEIEMSKFRYNPSESLFEVAQIHSLSFKAIG
S
AMGLGFLLSLLFFIEQNLVAALVNAPEN
RLVKGTAYHWDLLLLAIINTGLSLFGLPWIHAAYPHSPLHV
R
ALALVEERVENGHIYE
TIVDVKETRLTALGASVLVGLSLLLLPFPLQWIPKPVLYGLFLYIALTSLDGN
Q
LFSRVALLLKEQ
TSYPPTHYIRRVPQRKIHYFTGLQILQLLLLCAFGMSSLPYMKMVFPLIMIAMIPIR
Y
NLLPRIIEAKYLDVMDAEHRP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser