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Report for CCDS3813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3813.1 Public Homo sapiens 4 HPF1 24 110 108 CCDS HistoryNCBI Gene:54969Re-query CCDS DB by CCDS ID:3813.1Re-query CCDS DB by GeneID:54969See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3813.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393381.3 ENSP00000406598.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393381.3Link to Ensembl Protein Viewer:ENSP00000406598.1Re-query CCDS DB by Nucleotide ID:ENST00000393381Re-query CCDS DB by Protein ID:ENSP00000406598
Original member Current member NCBI NM_017867.3 NP_060337.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017867.3Link to Protein Sequence:NP_060337.2Re-query CCDS DB by Nucleotide ID:NM_017867Re-query CCDS DB by Protein ID:NP_060337Link to BLAST:NP_060337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060337.2 346 Q9NWY4 346 100% 0 0

Chromosomal Locations for CCDS 3813.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 169729578 169729709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169731704 169731876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169737660 169737747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169741957 169742107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169748744 169748842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169750536 169750725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169753676 169753835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169757830 169757877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGTCGGCGGTGGCGGGAAGCGCAGGCCCGGCGGAGAGGGGCCGCAGTGTGAAAAAACAACTGATGTGA
AGAAAAGTAAATTCTGTGAAGCTGATGTCTCCAGTGACCTTCGAAAAGAAGTAGAAAATCATTATAAGCT
TTCTTTACCTGAAGATTTCTATCACTTCTGGAAGTTCTGTGAAGAACTTGATCCTGAAAAGCCATCTGAT
TCACTTTCTGCAAGCCTTGGACTTCAATTAGTTGGTCCTTATGATATCCTTGCTGGAAAACATAAAACGA
AGAAAAAATCAACAGGCCTGAATTTTAACCTTCACTGGAGGTTTTACTATGATCCTCCTGAGTTCCAGAC
CATTATTATTGGAGATAATAAAACTCAGTACCACATGGGGTATTTCAGGGATTCTCCTGATGAATTTCCT
GTATATGTTGGTATAAATGAAGCAAAGAAAAATTGTATAATTGTTCCAAATGGAGATAATGTATTTGCTG
CAGTCAAATTATTTTTGACGAAAAAACTTAGAGAAATAACGGATAAAAAGAAAATCAATCTCTTGAAAAA
CATAGATGAAAAACTCACAGAAGCAGCCAGAGAATTGGGGTACTCGCTTGAACAGAGAACCGTGAAGATG
AAACAGAGAGATAAGAAAGTTGTGACAAAGACCTTTCATGGTGCAGGCTTGGTTGTTCCAGTAGATAAAA
ATGATGTTGGGTACCGAGAGCTCCCTGAAACAGATGCTGACCTCAAGAGAATTTGCAAGACAATAGTTGA
GGCTGCAAGTGATGAGGAGAGACTAAAAGCTTTTGCTCCCATTCAGGAAATGATGACTTTTGTGCAGTTT
GCTAATGATGAATGTGATTATGGCATGGGGCTTGAATTGGGAATGGATCTCTTTTGCTATGGCTCACATT
ATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATATAATCTGTTGAAGAGGAATCTGTTTGCAGA
AATTATTGAGGAGCATCTGGCAAACAGAAGTCAAGAGAACATAGACCAACTTGCTGCATGA

Translation (346 aa):
MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFCEELDPEKPSD
SLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIIIGDNKTQYHMGYFRDSPDEFP
VYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREITDKKKINLLKNIDEKLTEAARELGYSLEQRTVKM
KQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQF
ANDECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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