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Report for CCDS37570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37570.1 Public Mus musculus 17 Hnrnpm 23 108 98 CCDS HistoryNCBI Gene:76936Re-query CCDS DB by CCDS ID:37570.1Re-query CCDS DB by GeneID:76936See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148178.7 ENSMUSP00000120115.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148178.7Link to Ensembl Protein Viewer:ENSMUSP00000120115.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148178Re-query CCDS DB by Protein ID:ENSMUSP00000120115
Original member Current member NCBI NM_029804.3 NP_084080.1 Accepted alive Link to Nucleotide Sequence:NM_029804.3Link to Protein Sequence:NP_084080.1Re-query CCDS DB by Nucleotide ID:NM_029804Re-query CCDS DB by Protein ID:NP_084080Link to BLAST:NP_084080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084080.1 729 Q9D0E1-1 729 100% 0 0

Chromosomal Locations for CCDS 37570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33646496 33646659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33648813 33648864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33649595 33650397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33652273 33652326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33658388 33658465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33658870 33658914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33660213 33660314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33663225 33663285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33664585 33664634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33665492 33665645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33666494 33666685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33668985 33669078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33669169 33669176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33670081 33670133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33677274 33677440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33685267 33685379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGGCGGCAGGGGTCGAAGCGGCAGCCGAAGTGGCGGCGACAGAACCCAAAATGGAGGAAGAGAGCGGCG
CGCCCTGCGTGCCGAGCGGCAACGGAGCTCCGGGCCCGAAGGGTGAAGAACGACCTACTCAGAATGAGAA
GAGGAAGGAGAAAAACATAAAAAGAGGAGGCAATCGCTTTGAGCCATATTCCAACCCAACTAAAAGATAC
AGAGCCTTCATTACAAATATACCTTTTGATGTGAAATGGCAGTCACTTAAAGACCTGGTTAAAGAAAAAG
TTGGTGAGGTAACATACGTGGAGCTCTTAATGGACGCTGAAGGAAAGTCAAGGGGATGTGCTGTTGTTGA
ATTCAAGATGGAGGAGAGCATGAAAAAAGCTGCTGAAGTTCTAAACAAGCATAGTCTGAGTGGAAGGCCA
CTGAAAGTCAAGGAAGATCCTGATGGTGAACATGCAAGGAGAGCAATGCAAAAGGTGATGGCTACGACTG
GTGGGATGGGTATGGGACCAGGTGGCCCAGGAATGATTAATATCCCACCCAGTATCCTAAATAATCCTAA
CATCCCAAATGAGATTATCCATGCATTACAGGCTGGAAGACTTGGAAGCACAGTATTTGTAGCAAATCTG
GATTATAAAGTTGGCTGGAAGAAACTGAAGGAAGTATTTAGTATGGCTGGTGTGGTGGTCCGAGCAGACA
TTCTGGAAGATAAAGATGGGAAAAGTCGTGGAATAGGCATTGTGACTTTTGAACAGTCCATTGAAGCTGT
GCAAGCAATATCTATGTTTAATGGCCAGTTGCTGTTTGATAGACCGATGCACGTCAAGATGGATGAGAGG
GCTTTACCAAAGGGAGACTTTTTTCCTCCTGAACGCCCACAGCAACTTCCCCATGGACTTGGTGGTATTG
GCATGGGATTAGGACCTGGAGGTCAGCCTATTGATGCCAACCATCTGAGCAAAGGCATTGGAATGGGAAA
CCTAGGACCTGCAGGGATGGGAATGGAAGGCATAGGATTTGGAATAAATAAAATTGGAGGCATGGAAGGA
CCCTTTGGTGGTGGTATGGAAAACATGGGCCGATTTGGATCCGGGATGAACATGGGCCGAATAAATGAAA
TCCTAAGTAATGCACTGAAGAGAGGAGAGATCATTGCAAAACAGGGAGGAGGTGGAGCTGGAGGCAGTGT
CCCTGGGATCGAGAGGATGGGCCCTGGCATTGACCGCATTAGCGGTGCTGGCATGGAGCGCATGGGCGCA
GGCTTAGGCCATGGCATGGATCGAGTGGGCTCTGAGATTGAGCGCATGGGCCTGGTCATGGACCGCATGG
GCTCAGTTGAGCGCATGGGCTCCAGCATTGAGCGCATGGGCCCACTAGGCCTTGACCACATGGCCTCCAG
TATTGAGCGCATGGGCCAGACCATGGAGCGCATTGGTTCTGGCGTGGAGCGCATGGGTGCCGGCATGGGC
TTCGGCCTGGAGCGCATGGCCGCACCCATTGACCGTGTGGGCCAAACCATTGAGCGCATGGGCTCTGGTG
TAGAGCGCATGGGTCCTGCCATTGAACGCATGGGCCTAAGCATGGATCGGATGGTGCCCACAGGCATGGG
GGCCAGCCTGGAGCGCATGGGTCCTGTGATGGATCGGATGGCCACCGGCCTGGAGCGCATGGGCGCCAAC
AACCTGGAGCGCATGGGCCTGGAGCGTATGGGAGCCAACAGTCTTGAGCGCATGGGCCTGGAGCGAATGG
GCGCCAACAGCCTGGAACGTATGGGCCCTGCCATGGGCCCAGCATTGGGCGCTGGTATTGAGCGAATGGG
CCTGGCCATGGGTGGAGCCGGAGGTGCTAGCTTTGACCGAGCCATTGAGATGGAGCGGGGCAACTTTGGA
GGAAGCTTCGCAGGTTCCTTTGGCGGAGCTGGAGGCCATGCACCTGGAGTAGCCAGGAAGGCCTGCCAGA
TATTTGTGAGAAATCTCCCATTTGATTTTACATGGAAGATGCTAAAGGACAAGTTCAATGAATGTGGCCA
CGTGCTGTACGCCGACATCAAGATGGAGAACGGAAAGTCCAAGGGGTGCGGTGTGGTTAAGTTTGAGTCT
CCAGAGGTGGCTGAGAGAGCCTGCCGGATGATGAATGGCATGAAGCTGAGTGGCCGAGAGATTGATGTTC
GAATTGATAGAAATGCTTAA

Translation (729 aa):
MAAGVEAAAEVAATEPKMEEESGAPCVPSGNGAPGPKGEERPTQNEKRKEKNIKRGGNRFEPYSNPTKRY
RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRP
LKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVANL
DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER
ALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLSKGIGMGNLGPAGMGMEGIGFGINKIGGMEG
PFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGAGGSVPGIERMGPGIDRISGAGMERMGA
GLGHGMDRVGSEIERMGLVMDRMGSVERMGSSIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAGMG
FGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMDRMVPTGMGASLERMGPVMDRMATGLERMGAN
NLERMGLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGAGGASFDRAIEMERGNFG
GSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFES
PEVAERACRMMNGMKLSGREIDVRIDRNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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