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Report for CCDS36583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36583.1 Public Mus musculus 13 Net1 23 108 98 CCDS HistoryNCBI Gene:56349Re-query CCDS DB by CCDS ID:36583.1Re-query CCDS DB by GeneID:56349See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099946.5 ENSMUSP00000097529.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099946.5Link to Ensembl Protein Viewer:ENSMUSP00000097529.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099946Re-query CCDS DB by Protein ID:ENSMUSP00000097529
Original member Current member NCBI NM_001047159.2 NP_001040624.1 Accepted alive Link to Nucleotide Sequence:NM_001047159.2Link to Protein Sequence:NP_001040624.1Re-query CCDS DB by Nucleotide ID:NM_001047159Re-query CCDS DB by Protein ID:NP_001040624Link to BLAST:NP_001040624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001040624.1 541 Q9Z206-2 541 100% 0 0

Chromosomal Locations for CCDS 36583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 3884070 3884473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3884803 3884989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3886048 3886218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3886538 3886795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3887371 3887447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3887571 3887667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3887978 3888040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3888355 3888522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3888871 3888978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3893293 3893385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGTGGCGCATGATGAGATCGGAGGTCTCCTGCCCATTAAAAGGACGATCCGAGTCTTAGATGTTAATA
ACCAGCCCTTCCGGGAGCAGGAGGAGCCAAGCAATAAGAGAGTTCGGCCTCTAGCTCGGGTCACATCTTT
GGCAAACTTAATCTCTCCCGTAAGAAATGGAGCAGTCAGGCGCTTCGGTCAGACCATACAGTCGTTTACC
CTTCGTGGTGACCACAGATCCCCAGCCTCTGCCCAGAAGTCATTCAGCAGGTCCACCGTCCCCACACCCA
CCAAGAGAAGAAGCAGTGCACTATGGTCGGAAATGCTAGACATCAATATGAAGGAGTCCTTGACCACTCG
AGAGATCAAACGTCAGGAGGCCATATATGAATTGTCCCGAGGGGAACAGGACTTGATTGAGGATCTCAAG
CTCGCTAGAAAGGCCTACCATGACCCCATGTTAAAGCTGTCTATCATGTCAGAAGAGGAACTCACGCACA
TATTTGGAGACTTGGATGCTTATATACCTCTGCACGAAGATCTGTTAGCAAGAATTGGAGAAGCAACCAA
GCCTGATGGGACTGTGGAGCAGATCGGTCACATTCTCGTGAACTGGTTACCAGGCCTGAATGCCTACAGA
GGCTACTGCAGTAACCAGCTGGCGGCCAAGGCTCTTCTGGATCAGAAGAAACAAGACCCAAGAGTCCAAG
ACTTCCTCCAGCGCTGTCTGGAGTCTCCTTTCAGTCGAAAACTAGATCTTTGGAGTTTCCTAGATATCCC
TCGAAGTCGCCTCGTCAAGTACCCCTTACTGTTAAAAGAAATCCTTAGACACACTCCCAAAGACCACCGT
GATGTTCAGCTTCTAGAAGAGGCAATATTGATAATACAAGGAGTTCTTTCTGATATCAACTTGAAGAAAG
GCGAATCTGAGTGTCAGTATTACATCAACAAGCTGGAGTACCTGGACGAGAAGCAGAAGGACCCTAGGAT
CGAAGCGAGCAAAGTGCTGCTGTGCCATGGGGAGCTGAAGAATAAAAGCGGCCATAAACTGTACATTTTC
CTATTTCAAGACATCTTGGTTTTGACTCGGCCTGTCACCCGAAATGAGCGCCACTTGTACCAGGTTTACC
GGCAGCCCATCCCAGTCCAGGAGCTGGTGCTGGAAGACCTGCAGGACGGGGATGTGCGCATGGGTGGCTC
CTTCCGAGGGGCCTTCGGCAACTCAGACAAAGCTAAAAATATCTTTAGGGTCCGCTTCCAAGACCCTTCT
CCAGGCCACTCCCACACACTGCAAGCCAATGATGTGTTCCATAAGCAGCAGTGGTTCAACTGTATTCGCG
CGGCCATTGCCCCCTTCCAGCGGGCCGCCAGCCCCTTAGAGCTTCAGGGCTTGCCAGACCTCCACGAAGA
GTGTGAAGAGAACAACCCTTCTGCTGGGAACCTCAGAGCCCAGCGACGGTCATGCGTGGTTCCTGGTGTC
ATGCAGATAGACGAGGAAAGCGCCCTGGATTGTGGCTCCAGTGTACAGACAGTGGAAGACACCAGGAACA
TGAAGGCACAGCGGCCTCAGCCTGGCTTACGAAGAGCAAGGGACAAAGCACAGTCAGGTGGCAAAAAGAA
AGAGACTTTGGTGTAA

Translation (541 aa):
MVAHDEIGGLLPIKRTIRVLDVNNQPFREQEEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFT
LRGDHRSPASAQKSFSRSTVPTPTKRRSSALWSEMLDINMKESLTTREIKRQEAIYELSRGEQDLIEDLK
LARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYR
GYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHR
DVQLLEEAILIIQGVLSDINLKKGESECQYYINKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIF
LFQDILVLTRPVTRNERHLYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPS
PGHSHTLQANDVFHKQQWFNCIRAAIAPFQRAASPLELQGLPDLHEECEENNPSAGNLRAQRRSCVVPGV
MQIDEESALDCGSSVQTVEDTRNMKAQRPQPGLRRARDKAQSGGKKKETLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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