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Report for CCDS36359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36359.1 Public Mus musculus 11 Cep112 23 108 98 CCDS HistoryNCBI Gene:76380Re-query CCDS DB by CCDS ID:36359.1Re-query CCDS DB by GeneID:76380See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061287.11 ENSMUSP00000050597.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061287.11Link to Ensembl Protein Viewer:ENSMUSP00000050597.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061287Re-query CCDS DB by Protein ID:ENSMUSP00000050597
Original member Current member EBI ENSMUST00000130515.8 ENSMUSP00000114569.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130515.8Link to Ensembl Protein Viewer:ENSMUSP00000114569.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000130515Re-query CCDS DB by Protein ID:ENSMUSP00000114569
Original member Current member NCBI NM_029606.3 NP_083882.3 Accepted alive Link to Nucleotide Sequence:NM_029606.3Link to Protein Sequence:NP_083882.3Re-query CCDS DB by Nucleotide ID:NM_029606Re-query CCDS DB by Protein ID:NP_083882Link to BLAST:NP_083882.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083882.3 954 Q5PR68-1 954 100% 0 0

Chromosomal Locations for CCDS 36359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108434134 108434239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108437206 108437396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108440424 108440596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108470292 108470382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108472017 108472094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108486593 108486640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108486913 108486990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108498244 108498330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108503066 108503165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108506539 108506657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108508222 108508365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108518679 108518833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108519130 108519259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108519896 108519988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108523319 108523378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108531386 108531465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108570288 108570423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108591004 108591111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108606213 108606395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108664496 108664726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108752578 108752640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108757670 108757819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108808650 108808739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108855783 108855884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108859343 108859407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108860192 108860195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2865 nt):
ATGGAAACAGGAAGTGAAGAAGAAAAATGGGAGAAGCTAGATGCAGAATTTGATCACTTCGTGGTAGATA
TGAAGCCCTTTGTTTTAAAATTACCCCATAGGTCAGAACGGCAGAGGTGTGCTCTTTGGATCAGAAAGCT
GTGTGAGCCCTCAGGAACGGGTGCAGGACTCATGGGTAGGAAGAATCGAAACCTGTATGCAAAGCTGTTA
CTGCATATGCTTAGGCGAGGAATACTTGAAGGCCCTTTCACACACCGCCCGGAGCCAGGAACGCTGAAAA
CATTGCCATCGTACATGTCCATCTATTTTGATGAACCAAATCAAGCACAACCCAAAGATTCGAGCCCAGA
GAAGTTACCTGACTGGGTGAGGGGTGAGCTGCAGACGGGCGAGCAGAGGTTAAGTGACTCATGGCAGTGC
TCTTCTGGAGAGGACAACACGCTGGTGCTGGCGGCCAGTGATGCTCACAGAGAACAGTACACTGGAAAGC
TCCGAATGAGGTCCCATTCTGTGAGTCCAACTTATAGAGAAGACAAACAACACATTACTTCAAAGATCTG
TGAAGTTCATTCAAAAACGTCTCCTATTTCTTTGGATGACAGTGACATTGAAGTTCGCCTGAACAGTTGG
AATCTTGGGATTGAAAATCCCCGGTACCTGAGACAGAAACCTCTCCCAGTTTCTCTGATGACTCCCAAGG
GCAGCCTGAGGAAGGCTAGCAGTCTTCATGATGACCATTTTCTCTCTCGAATGCACGAGAAAGAGTTGGA
CATGAAAACAAAAATGATGGAAGCAAAATTTTCTGAAGAGAAACTTAAGCTGCAGCAGAAGCATGATGCC
GAAGTGCAGAAGATTTTAGAAAGAAAGAATAATGAATTAGAAGAGTTGAAAATCTTATACAAAAAGAAAC
AAACTGAAACTGAGGAGACCATACGAAAGCTTGAAAAGAAAGTTCAGATCCTTATCCGTGACTGTCAGGT
TATCAGAGAAACTAAAGAAAACCAGATAACCGAGCTGAAGAAGATCTGTGAGCAAAGCACAGAGTCTCTG
AATAATGATTGGGAAAAAAAGCTTCACAATGCTGTAGCAGAAATGGAAAAGGACAAATTTGAGCTTCAAA
AGCACCATACGGAGACCATCCAGGAACTGCTGGAGGACACAAATGTGCGGCTGAGTAAAATGGAGGCAGA
CTATGTGGTGCAGATGCAGTCCACAAACCACATGATCAAAGAGCTGGAGGGCCGTGTCCAGCAACTGATG
GGAGAAGCAGAGAACAGCAATCTACAGAGGCAGAAATTGACCCAAGAAAAATTGGAGCTGGAAAGATGCT
ACCAGATAACATGTAATGAATTGCAGGAGTTAAAGACAAGGCGCAACATACTACATAAAGAGAAAGAACA
TCTTGTAAATGACTATGAGCAAAATGTGAAATTATTAAAAACTAAATATGATTCTGACATAAATCTCCTG
AGACAAGAGCATGCACTTTCAACTTCTAAGACATCTGGTGTGATTGAAGAGTTAGAACAGAACATCTGTC
AATTAAAACAGCAGGTCCAAGAATCGGAGCTTCAGAGGAAACAGCAAGTAAAAGATCAAGAAAATAAGTT
TCACATGGAGAAAAACCATTTAAAACACACCTATGAGAAAAAGGTTCATGAACTGCAGAGTGAACTTGAT
AAAGAGAAGGAAGATGCTCAGAGGAAGATCCATAAATTTGAGGAAGCTTTGAAGGAGAAGGAGGAGCAGC
TCAGCAGAGTGACTGAAGTTCAGAGGCTGCAAGCCCAGCAGGCAGATGCTGCTCTGGAGGAGTTTAAGCG
GCAGGTAGAAGTGAACTCTGAGAAGGTCTATGGTGAGATGAAAGAGCAGATGGAAAAAGTGGAAGCAGAC
CTAACGAGATCCAAGTCTCTCCGTGAGAAGCAGTCCAAGGAGTTTCTGTGGCAGCTGGAAGACGCCAAGC
AGAGATATGAACAGCAGATAGTAGAGCTGAAGCTGGAGCATGAACAGGAGAAGACGCACCTATTACAGCA
GCACAGCGCAGAGAAGGATAGCCTAGTCCGAGACCATGATCGGGAAATTGAAAACCTGGAGAAACAGCTT
CGCGCTGCCAATATGGAGCACGAAAATCAAATTCAAGAGTCCAAGAAACGAGATGCTCAGGTTATTGCTG
ACATGGAGGCCCAGGTTCATAAGCTGAGGGAAGAGCTGATTAGTGTGAACTCTCAGCGGAAACAGCAGTT
GATAGAACTTGGTCTTCTTCGGGAAGAAGAGAAGCAGAGAGCTGCAAAGGACCATGAGACTGCTGTCAAG
AAGCTGAAGGCCGAGTCAGAGAGGGTGAAAATGGAGCTCAAAAAGACACACGCTGCTGAGACCGAGATGA
CTCTGGAGAAGGCCAACAGCAGGCTGAAGCAGATCGAGAAGGAATACACTCAGAAGCTTGCCAAATCTTC
TCAGATCATAGCAGAACTTCAGACAACCATTTCCTCTCTGAAAGAGGAGAGCAGTCGGCAGCAGCTTGCT
GCAGAAAGGCGGCTCCAGGATGTTATACAAAAGTTTGAAGATGAGAAGCAGCAGCTGATTAGAGATAATG
ACCAAGCAATCAAGGCTTTACAAGATGAACTAGAAACCCGCTCTCATCAGGTGCGAAGTGCAGAGAAAAA
GTTACATCACAAAGAACTGGAGGCGCAGGAGCAGATAATGTACATACGACAAGAATATGAAACAAAATTC
AAGGGGTTAATGCCAGCGTCTCTAAGACAAGAACTTGAGGACACCATATCCTCCCTAAAGTCACAGGTCA
ACTTTCTACAAAAGAGGGCATCTATCCTTCAAGAAGAACTGACCACCTACCAAAGCAGAAGGTAA

Translation (954 aa):
METGSEEEKWEKLDAEFDHFVVDMKPFVLKLPHRSERQRCALWIRKLCEPSGTGAGLMGRKNRNLYAKLL
LHMLRRGILEGPFTHRPEPGTLKTLPSYMSIYFDEPNQAQPKDSSPEKLPDWVRGELQTGEQRLSDSWQC
SSGEDNTLVLAASDAHREQYTGKLRMRSHSVSPTYREDKQHITSKICEVHSKTSPISLDDSDIEVRLNSW
NLGIENPRYLRQKPLPVSLMTPKGSLRKASSLHDDHFLSRMHEKELDMKTKMMEAKFSEEKLKLQQKHDA
EVQKILERKNNELEELKILYKKKQTETEETIRKLEKKVQILIRDCQVIRETKENQITELKKICEQSTESL
NNDWEKKLHNAVAEMEKDKFELQKHHTETIQELLEDTNVRLSKMEADYVVQMQSTNHMIKELEGRVQQLM
GEAENSNLQRQKLTQEKLELERCYQITCNELQELKTRRNILHKEKEHLVNDYEQNVKLLKTKYDSDINLL
RQEHALSTSKTSGVIEELEQNICQLKQQVQESELQRKQQVKDQENKFHMEKNHLKHTYEKKVHELQSELD
KEKEDAQRKIHKFEEALKEKEEQLSRVTEVQRLQAQQADAALEEFKRQVEVNSEKVYGEMKEQMEKVEAD
LTRSKSLREKQSKEFLWQLEDAKQRYEQQIVELKLEHEQEKTHLLQQHSAEKDSLVRDHDREIENLEKQL
RAANMEHENQIQESKKRDAQVIADMEAQVHKLREELISVNSQRKQQLIELGLLREEEKQRAAKDHETAVK
KLKAESERVKMELKKTHAAETEMTLEKANSRLKQIEKEYTQKLAKSSQIIAELQTTISSLKEESSRQQLA
AERRLQDVIQKFEDEKQQLIRDNDQAIKALQDELETRSHQVRSAEKKLHHKELEAQEQIMYIRQEYETKF
KGLMPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQSRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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