NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36334.1 Public Mus musculus 11 Kcnh4 23 108 98 CCDS HistoryNCBI Gene:380728Re-query CCDS DB by CCDS ID:36334.1Re-query CCDS DB by GeneID:380728See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 36334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107361.8 ENSMUSP00000102984.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107361.8Link to Ensembl Protein Viewer:ENSMUSP00000102984.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107361Re-query CCDS DB by Protein ID:ENSMUSP00000102984
Original member Current member EBI ENSMUST00000107363.2 ENSMUSP00000102986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107363.2Link to Ensembl Protein Viewer:ENSMUSP00000102986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107363Re-query CCDS DB by Protein ID:ENSMUSP00000102986
Original member Current member NCBI NM_001081194.2 NP_001074663.1 Accepted alive Link to Nucleotide Sequence:NM_001081194.2Link to Protein Sequence:NP_001074663.1Re-query CCDS DB by Nucleotide ID:NM_001081194Re-query CCDS DB by Protein ID:NP_001074663Link to BLAST:NP_001074663.1

Chromosomal Locations for CCDS 36334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100741603 100741998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100744124 100744200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100745236 100745342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100745615 100745967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100746165 100746203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100746745 100746989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100747563 100747812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100749609 100749808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100750232 100750426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100752245 100752452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100755134 100755291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100755670 100755913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100756860 100756987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100757079 100757225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100757567 100757800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100759530 100759605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGCCGGTCATGAAGGGGTTGCTGGCCCCGCAAAACACCTTTCTGGACACCATCGCCACCCGCTTTGACG
GCACGCACAGCAACTTCCTTCTGGCCAATGCACAGGGCCCACGGGGTTTTCCCATCGTCTACTGCTCTGA
CGGCTTCTGTGAGCTCACAGGCTACGGCCGCACCGAGGTCATGCAGAAAACCTGTAGCTGTCGGTTCCTC
TATGGCCCAGAGACCAGTGAACCAGCCCTGCAACGGTTGCAAAAAGCCCTGGAGGGCCACCAAGAACACC
GAACTGAAATCTGCTTTTACCGAAAGGATGGCTCAGCCTTCTGGTGTCTTCTGGACATGATGCCCATCAA
GAATGAGATGGGGGAGGTTGTGCTTTTCCTATTTTCCTTCAAGGACATCTCTCAGAGTGGAGGCCCAGGA
CTTGGCTCACCAGGAATCCATGGGGACAATAATCACGAAAACTCTCTTGGGAGGAGAGGAACTAGCTCAA
GACTTAGGTCCACGAAGAGGCAGAACCGGACTGTCCTACACCGGTTGACTGGCCACTTTGGTCGCCGGGG
CCAGAGCAGTGTGAAGGCCAACAGTAACCTGTTTGAGCCAAAACCATCAGTGCCCGAGTACAAGGTGGCC
TCTGTGGGGGGCTCCCGCTGCCTCCTCCTCCACTACAGCATCCCCAAGGCTGTCTGGGATGGTCTCATCC
TCCTCGCCACATTCTACGTCGCGGTCACTGTCCCCTACAACGTCTGCTTCGCGGGTGATGACGACACCCC
CATCACTTCCCGACACACCCTTGTCAGTGACATCGCTGTGGAAATGCTCTTCATCCTGGACATCATCTTG
AACTTCCGCACCACCTACGTGTCCCAGTCTGGCCAGGTGATTTCGGCTCCTCGGTCCATTGGCCTCCACT
ATCTGGCCACCTGGTTCTTTGTAGACCTCATTGCTGCTTTGCCCTTTGATCTGCTGTATGTCTTCAACAT
CACTGTGACCTCACTGGTACATCTGCTGAAAACCGTGCGGCTCCTGCGGCTGCTGCGGCTGCTGCAGAAG
TTAGAGCGGTACTCACAGTGCAGTGCAGTGGTGCTCACGCTGCTCATGTCCGTCTTTGCCCTCCTTGCTC
ATTGGATGGCCTGCGTCTGGTATGTCATCGGGCGCCGGGAGATGGAGGCCAATGATCCACTGCTCTGGGA
CATTGGTTGGTTGCATGAGCTGGGCAAGCGGTTGGAGGAGCCTTATGTCAATGGCTCGGCAGGTGGACCA
TCTCGGCGCAGTGCCTACATCGCTGCGCTGTACTTCACGCTGAGCAGCCTCACCAGTGTAGGCTTCGGCA
ACGTGTGTGCCAACACAGACGCTGAGAAGATCTTCTCCATCTGCACGATGCTCATAGGCGCGCTGATGCA
CGCAGTGGTGTTTGGGAATGTCACAGCCATCATCCAGCGCATGTACTCCCGACGCTCGCTCTACCACAGC
CGCATGAAGGATCTCAAGGACTTCATCCGAGTGCATCGCCTGCCCCGCCCACTCAAGCAGCGCATGCTCG
AGTACTTCCAGACGACGTGGGCAGTCAACAGCGGCATCGATGCCAACGAGTTACTGCGTGACTTCCCGGA
TGAGCTGCGTGCTGACATTGCTATGCACCTGAACAGGGAGATCCTGCAGCTGCCTCTGTTTGGAGCGGCT
AGCAGGGGCTGCCTGCGGGCCCTCTCCTTGCACATCAAGACCTCCTTCTGTGCTCCTGGGGAGTACCTGT
TACGCCGTGGGGATGCCCTCCAGGCACACTACTACGTCTGCTCTGGCTCGCTTGAGGTGCTCCGGGACAA
CATGGTGCTGGCCATCCTGGGGAAGGGGGACTTGATTGGGGCAGACATCCCTGAGTTGGGACAGGAGCCT
GGGTCAGGGGCAGGCCCCAGCTGTGTGCTGAAGACCAGCGCCGATGTGAAAGCTCTGACTTACTGTGGCC
TGCAGCAGCTGAGCAGCCGAGGGCTGGCGGAGGTCCTGCGGCTGTATCCGGAATATGCAGCTGCCTTCCG
GGCTGGCCTACCCCGGGACCTAACCTTCAACCTGCGCCAAGGTTCTGAAAACAATGGCCTCGGCCGCTTC
TCACGGTCTCCTCGTCTCTCCCAGGCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCAT
CCATCACAGAAACCGAGGGTGGCACGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCACCTGCTGCC
CAACCTCAGTCCAGCACGACCTCGGGGGTCCCTGGTCAGCCTTTTGGGCGAGGAGCTGCCCCCATTCTCA
GCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTCAGAGTCCCT
CCCCGCACGGCCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCATTCCCCCACTGGGAAC
ATTTGGACCTCCGGACCTCAGTCCCCGGATCGTGGATGGCATTGAAGACTCCAGTAACACAGCTGAGGCT
CCTACATTCCGCTTCAGCAAGAGGCCAGAGCCCACCAGAACTCGCTCACAGGCTCCCCCTTCAGGCCCCA
GGCTCAGCCGGGAACTGGCCACAGAGGCAGCAGAGGAGGTGAAGGAAAAGGTCTGCAGGCTGAACCAAGA
GATCTCCCGTCTCAATCAGGAAGTGTCTCAGCTGAGCCGGGAGCTGCGGCAAGTGATGGGTCTCTTACAG
GCCAGGCTGGGACCCCCAAGTCACACAGCTGGTCCAGCTTGGCTCCCAGACCTTCCTTGCCCCCACCAGA
GACTACCATGCATCTCTCCTCATATGTCTGGACCACCACCTGGTCTCCAGAATACTACACTCGCTGTAGT
CCACTGTCCAGCCAGTGTTGGGACAGTGGAGATAGGGGCCACCCCCTCAGAGCTGAGACCTTCCACGATA
CCACCCTATCCCTCGGAACCTGATCCTCTGGGACCCTCTCCAGCGCCAGAGGCTCCTCCCCTGACCCCAA
GCCTCCTGAAGCACAGCTTCCAGTCTGGGTCAGACACATTCCACTGA

Translation (1018 aa):
MPVMKGLLAPQNTFLDTIATRFDGTHSNFLLANAQGPRGFPIVYCSDGFCELTGYGRTEVMQKTCSCRFL
YGPETSEPALQRLQKALEGHQEHRTEICFYRKDGSAFWCLLDMMPIKNEMGEVVLFLFSFKDISQSGGPG
LGSPGIHGDNNHENSLGRRGTSSRLRSTKRQNRTVLHRLTGHFGRRGQSSVKANSNLFEPKPSVPEYKVA
SVGGSRCLLLHYSIPKAVWDGLILLATFYVAVTVPYNVCFAGDDDTPITSRHTLVSDIAVEMLFILDIIL
NFRTTYVSQSGQVISAPRSIGLHYLATWFFVDLIAALPFDLLYVFNITVTSLVHLLKTVRLLRLLRLLQK
LERYSQCSAVVLTLLMSVFALLAHWMACVWYVIGRREMEANDPLLWDIGWLHELGKRLEEPYVNGSAGGP
SRRSAYIAALYFTLSSLTSVGFGNVCANTDAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHS
RMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREILQLPLFGAA
SRGCLRALSLHIKTSFCAPGEYLLRRGDALQAHYYVCSGSLEVLRDNMVLAILGKGDLIGADIPELGQEP
GSGAGPSCVLKTSADVKALTYCGLQQLSSRGLAEVLRLYPEYAAAFRAGLPRDLTFNLRQGSENNGLGRF
SRSPRLSQARSDTLGSSSDKTLPSITETEGGTEPGAGSKPRRPHLLPNLSPARPRGSLVSLLGEELPPFS
ALVSSPSLSPTPSPALAGRGQSPSPHGPPRGSAAWKPPQLLIPPLGTFGPPDLSPRIVDGIEDSSNTAEA
PTFRFSKRPEPTRTRSQAPPSGPRLSRELATEAAEEVKEKVCRLNQEISRLNQEVSQLSRELRQVMGLLQ
ARLGPPSHTAGPAWLPDLPCPHQRLPCISPHMSGPPPGLQNTTLAVVHCPASVGTVEIGATPSELRPSTI
PPYPSEPDPLGPSPAPEAPPLTPSLLKHSFQSGSDTFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH