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Report for CCDS36113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36113.1 Public Mus musculus 11 Cobl 23 108 98 CCDS HistoryNCBI Gene:12808Re-query CCDS DB by CCDS ID:36113.1Re-query CCDS DB by GeneID:12808See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046755.13 ENSMUSP00000045693.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046755.13Link to Ensembl Protein Viewer:ENSMUSP00000045693.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046755Re-query CCDS DB by Protein ID:ENSMUSP00000045693
Original member NCBI NM_172496.3 NP_766084.3 Updated not alive Link to Nucleotide Sequence:NM_172496.3Link to Protein Sequence:NP_766084.3Re-query CCDS DB by Nucleotide ID:NM_172496Re-query CCDS DB by Protein ID:NP_766084
Current member NCBI NM_172496.4 NP_766084.3 Accepted alive Link to Nucleotide Sequence:NM_172496.4Link to Protein Sequence:NP_766084.3Re-query CCDS DB by Nucleotide ID:NM_172496Re-query CCDS DB by Protein ID:NP_766084Link to BLAST:NP_766084.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766084.3 1337 Q5NBX1-1 1337 100% 0 0

Chromosomal Locations for CCDS 36113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 12238042 12238059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12249650 12249913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12251023 12251142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12253089 12254971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12256145 12256242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12266856 12267144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12306958 12307128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12309614 12309752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12343744 12343917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12365105 12365179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12369594 12369691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12375810 12376038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12378149 12378359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12386563 12386766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12464682 12464722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4014 nt):
ATGGACGCGCCGCGTGCACTGGCGGCCAAGCCCCCCACAGGAAGGAAGATGAAGGCCCGTGCTCCGCCAC
CTCCTGGAAAGCCTGCTGCCCAGAATGTCCACAGCGAACAGAAACTGCCCCATGATGCCACCCTGGGATC
CCAGCAAAGCCTGGTCTACATGAAGGAGGCACTGCAGAACAGCACCTTGGACATCACCGTGGTTCTGCCC
AGTGGACTGGAGAAGCAGAGTGTGGTTAGTGGGAGCCACGCAATGATGGACCTACTGGTTGAACTCTGCC
TTCAGAACCACCTGAATCCTTCTCACCACGTCCTAGAGATCTGGTCTTCTGAGACCCAACAGCCTTTGAG
TTTTAAGCCAAATACGTTGATTGGGTCCTTGAATGTGCATACTGTACTTCTGAAAGAAAAAGTCCCTGAA
GAAAGAGTTAAACCTGGCCTAACCAAGGCTCCTGAGAAATCTGTACGACTGGTAGTGAACTACCTGAGAA
CGCAGAAGGCTGTCGTGCGGGTGAGCCCTGAGGTGCCACTACAGAATATTCTGCCAGTCATCTGTGCGAA
GTGTGAGGTCAACCCAGAACACGTGATTCTGCTCAGAGACAATGTTGCCGGGGAGGAGCTGGAGCTGTCC
AAGTCCCTGAATGAACTAGGGATCAAGGAGCTGTATGCGTGGGACAACAGAAGAGAAATGTTTAGAAAAT
CATCACTTGGCAATGATGAGACAGACAAAGAGAAGAAAAAGTTTCTGGGATTTTTCAAAGCTAATAAAAG
GAGCAACAGTAAGGCTGAGCATCTTGGGCTGTCAGGTGCAGATAGTGATGAGGACCCGGCGAAGTCAGCA
TCTGGAGGGGACTTGAACGGCTGCGTAACAACACCCAACTCACCATCCTTGCATTCTCGGTCCCTAACAC
TGGGTCCCTCCCTCTCCCTGGGCAACATCTCTGGAGTGTCTATGAAGTCAGACATGAAGAAGCGCAGAGC
CCCTCCTCCTCCAAGTCCCAAGCTGCTGGGTCAAGACAAGGTATCAGAAAAGGCCTCCCTCAGCTCACAG
GCTGATCTCCAGAAGAAGAAGAGGCGGGCGCCAGCTCCTCCTCCACCACAGCAGCCACCACCAAGTCCTG
TGGTCCCCAACCGCAAGGAAGATAAGGAAGAGAACAGGAAGAGCACAGTGGGTGTTGGACGTCAGGTGCC
ACAAAAGCCTCCCAGAGGCACAGCTCGGGGCCCACCCCAGTTAGTGCTCCCCCCGCCCCCACCCTACCCT
CCTCCTGACACAGATGTGACAGAGCCTGTCACCTTTCCTGGGGAAGGCGCTGGTTCCGAGACCTCAGAGC
TGAGACCCAAACTGAGTCTGCCTCTGGGGCCTGGCAGCCACTGCAGCATGGGTGGAGTCTCTCAGGTGCC
AGCGGAGAGTGAGGAGACAGCATCTGAGGACACAACCGAGGACTCGGGGGTCATGAGCTCTCCCTCAGAT
GCCATCTCCCTGGACTCACAACAAGACAGCATGAGATCCAAGGACAAATGGTCCACAGACCAGGAAGACG
GCAGTGACCAGGACCTGGCTGGAACTCCAGAACTGGGTCCCCAAAAGAGCCCATCATGGGGGAAAAGTGG
TTCAGGAAGCTCAATTCTAAGGACTGAGAAAGCCACCATGCCTACCAATGATGATGAAGACCTATTCATC
ACTGGCCACTTACATCAGACCCTGGCAGAACTTGATGAAGACCTGGAAGGAATGGAAGAAAATTATGAAA
CAGATACTAGCTCTCTAACCAACTCTGTCAATGGTGTATCCAACCACAGTCTGCAAGAAGCCATAATCCC
TGATAGTGGCGTGGATGACATCCCAGTCACTTTTATCGGGGAAGTTTCTGATGAGCCTTTTGACTCAGGG
CTGTTCTCCAGTAGATGTAACAATGCCACTACTTTTAACACGGGGAGCATTGCTAGCCAAAGATCTCATC
TGTCCCCATCTCAGACTGAGCATAGCCAGCCATTCGTAAGGACAAGTAGAAAAGAGCCTGATCCCTCCCC
TCCTTCCCAAGATAACAGGAAGAGAAATCAGCCAACCTTAGCCAACACATCTGAAAATGAGAATCCAGTT
GAAACAGACCCCACAGTTACATCACTTGTTTCAAAGCTTTTAATAGATGACCCAAAAGCAAAGGATAAAG
GCAAAGTGCATGGTTCTAGTCACAGTGAGAAGACACAGGCAGGTCATGGAATAAACTCACTGCGAGTGAA
TCCAAGAGATGGTAAGGATGAGAGCTCCAATTCAGCACCCCCACCATGGTCTCATCATGGCCAGGCCTTA
GGGGGAAGCTATGGACTCAAGTATGGCCTCACGACATATAAAATTGTTCCTCCCAAATCAGAGATGAGGT
GTTATGACAGGGATGTGTCCCTCTCCACTGGTGCCATTAAGATTGATGAACTAGGGAATCTGGTGAGTCC
TCACATGAACGGAAGCAGGACCATATCCCCACCATCAGCTGTTGTCGAAACAGACACTCCACCTATTGGA
AAAGTCAAAGAGTTCTGGAGGCGCAACTCAATGGAAAAGTACCTTAATGGGCCGGCTGAGTGCACTATCA
AAAGGGCCCCCTCCACCACTATCACTGCCACACCAGAAAAACCACAGCAAGATAATGGGATGAAGGCAGC
CTTCACAGTGACCACTCCCCAGCAGCAGCCTGCCTCACAGGAATATGGGGCACACCTGGAGGAAGAGAGA
AGCCGGCCACAGTCAGCAGTCTCTTGTTCTGTGAAAGTGCCAGCATCTAATCCCACAGACATCACATTCC
TCAAGCCTCAAAGAAGAACATCCAGCCAGTATGTGGCCTCTGCTATTGCCAAGAAGATGGGGCCTCCAAA
AGTCCATGCTGATGTGGTGAGACCACATAAGGCAACCACTGAACAGTGTCATGAAGAAGCAAAGCTGGCT
AGATCTCCTCCCACCAGGAAAGATGATGCAGCTCCCAACCTACACTCAGAGGCAAGGCAGCATGAACATG
GGACAAACCAGAGCTCTGTCTGCCTTCCCAGCAACCCTGGTGTGCAATTGCCAGCAGGAGGCCATCCCAA
AGTAGAGGTCAACAGCACATATGGGAAGTCATCGACTCAAGACTATCCTGCTGCTGTCCACAGAAACTCC
TATTTCCTCCCAGGCAGATCTTCCCATAGGGATCGTGTTTCTGTGGGACAGAGCTGTGGTTTCAATGAAA
AGCAAACTACAAGTAACCAAAAGGCAAATTCAACATCTAACTTCTCGCAGGCACTGGACAAGGCGCATCC
ACCCCCTCTGCTCTTGGCAGAGGCCCGTGACTCTGGGAGGATACTGATGAATGGCTCTGCACGAACCCCA
GGAAATTGTGAGCCCCCCCACTCTCCAAAAGAATCCACCCTGACTAGCTATATTATCTTACAGACAGAGG
AAAAGCCCAGTTCGTTATCTACAGATGGTCAAGACGCAGATGATACTCTACCGTCCAGCATTTTTGGGCC
AAAGAAAAAGTTCAAGCCTGTCATTCAAAGGCCACTCCCAAAAGATGTATCCCTGCACAGTGCCCTGATG
GAAGCTATCCACTCATCAGGAGGGAGAGAAAAGCTCCGGAAGACTGCAGAACAGACGTCAGAAGGAAGGC
CAAAGAAACCATCCTACGTGGAGGCAGAGAGTGAGCGATCTGCCCTTCTGGCAGCCATTCGGGGTCACAG
TGGGACTCTCAGCCTCAGGAAGGTGTCATCCCTTGCCTCTGAGGAGCTCCAGAGCTTCCGCAATGCTGCA
CTCGGGGCTCCAGGTTTGGATAAACCTCAGCAAGAAGACCTTGGCCTTCCACCCCCACCTGCCCTGCCAC
CACCACCCGCTCCAGCCCCCCAGGCTCCTTCAGCCTCCGTAACAGTTTCTAGGTTCAGCACCGGCACCCC
CAGCAACTCAGTGAATGCTAGACAAGCCTTGATGGATGCCATCCGCTCGGGCACAGGAGCTGCAAGACTA
AGAAAGGTTCCCTTGCTCGTGTGA

Translation (1337 aa):
MDAPRALAAKPPTGRKMKARAPPPPGKPAAQNVHSEQKLPHDATLGSQQSLVYMKEALQNSTLDITVVLP
SGLEKQSVVSGSHAMMDLLVELCLQNHLNPSHHVLEIWSSETQQPLSFKPNTLIGSLNVHTVLLKEKVPE
ERVKPGLTKAPEKSVRLVVNYLRTQKAVVRVSPEVPLQNILPVICAKCEVNPEHVILLRDNVAGEELELS
KSLNELGIKELYAWDNRREMFRKSSLGNDETDKEKKKFLGFFKANKRSNSKAEHLGLSGADSDEDPAKSA
SGGDLNGCVTTPNSPSLHSRSLTLGPSLSLGNISGVSMKSDMKKRRAPPPPSPKLLGQDKVSEKASLSSQ
ADLQKKKRRAPAPPPPQQPPPSPVVPNRKEDKEENRKSTVGVGRQVPQKPPRGTARGPPQLVLPPPPPYP
PPDTDVTEPVTFPGEGAGSETSELRPKLSLPLGPGSHCSMGGVSQVPAESEETASEDTTEDSGVMSSPSD
AISLDSQQDSMRSKDKWSTDQEDGSDQDLAGTPELGPQKSPSWGKSGSGSSILRTEKATMPTNDDEDLFI
TGHLHQTLAELDEDLEGMEENYETDTSSLTNSVNGVSNHSLQEAIIPDSGVDDIPVTFIGEVSDEPFDSG
LFSSRCNNATTFNTGSIASQRSHLSPSQTEHSQPFVRTSRKEPDPSPPSQDNRKRNQPTLANTSENENPV
ETDPTVTSLVSKLLIDDPKAKDKGKVHGSSHSEKTQAGHGINSLRVNPRDGKDESSNSAPPPWSHHGQAL
GGSYGLKYGLTTYKIVPPKSEMRCYDRDVSLSTGAIKIDELGNLVSPHMNGSRTISPPSAVVETDTPPIG
KVKEFWRRNSMEKYLNGPAECTIKRAPSTTITATPEKPQQDNGMKAAFTVTTPQQQPASQEYGAHLEEER
SRPQSAVSCSVKVPASNPTDITFLKPQRRTSSQYVASAIAKKMGPPKVHADVVRPHKATTEQCHEEAKLA
RSPPTRKDDAAPNLHSEARQHEHGTNQSSVCLPSNPGVQLPAGGHPKVEVNSTYGKSSTQDYPAAVHRNS
YFLPGRSSHRDRVSVGQSCGFNEKQTTSNQKANSTSNFSQALDKAHPPPLLLAEARDSGRILMNGSARTP
GNCEPPHSPKESTLTSYIILQTEEKPSSLSTDGQDADDTLPSSIFGPKKKFKPVIQRPLPKDVSLHSALM
EAIHSSGGREKLRKTAEQTSEGRPKKPSYVEAESERSALLAAIRGHSGTLSLRKVSSLASEELQSFRNAA
LGAPGLDKPQQEDLGLPPPPALPPPPAPAPQAPSASVTVSRFSTGTPSNSVNARQALMDAIRSGTGAARL
RKVPLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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