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Report for CCDS36046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36046.1 Public Mus musculus 10 Kitl 23 108 98 CCDS HistoryNCBI Gene:17311Re-query CCDS DB by CCDS ID:36046.1Re-query CCDS DB by GeneID:17311See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105283.8 ENSMUSP00000100920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105283.8Link to Ensembl Protein Viewer:ENSMUSP00000100920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105283Re-query CCDS DB by Protein ID:ENSMUSP00000100920
Original member NCBI NM_013598.3 NP_038626.1 Updated not alive Link to Nucleotide Sequence:NM_013598.3Link to Protein Sequence:NP_038626.1Re-query CCDS DB by Nucleotide ID:NM_013598Re-query CCDS DB by Protein ID:NP_038626
Current member NCBI NM_013598.4 NP_038626.1 Accepted alive Link to Nucleotide Sequence:NM_013598.4Link to Protein Sequence:NP_038626.1Re-query CCDS DB by Nucleotide ID:NM_013598Re-query CCDS DB by Protein ID:NP_038626Link to BLAST:NP_038626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038626.1 273 P20826-1 273 100% 0 0

Chromosomal Locations for CCDS 36046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100016021 100016035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100051846 100051959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100064084 100064146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100076735 100076905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100079974 100080130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100080857 100080940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100087347 100087456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100088153 100088220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100089196 100089235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGAAGAAGACACAAACTTGGATTATCACTTGCATTTATCTTCAACTGCTCCTATTTAATCCTCTTGTCA
AAACCAAGGAGATCTGCGGGAATCCTGTGACTGATAATGTAAAAGACATTACAAAACTGGTGGCAAATCT
TCCAAATGACTATATGATAACCCTCAACTATGTCGCCGGGATGGATGTTTTGCCTAGTCATTGTTGGCTA
CGAGATATGGTAATACAATTATCACTCAGCTTGACTACTCTTCTGGACAAGTTCTCAAATATTTCTGAAG
GCTTGAGTAATTACTCCATCATAGACAAACTTGGGAAAATAGTGGATGACCTCGTGTTATGCATGGAAGA
AAACGCACCGAAGAATATAAAAGAATCTCCGAAGAGGCCAGAAACTAGATCCTTTACTCCTGAAGAATTC
TTTAGTATTTTCAATAGATCCATTGATGCCTTTAAGGACTTTATGGTGGCATCTGACACTAGTGACTGTG
TGCTCTCTTCAACATTAGGTCCCGAGAAAGATTCCAGAGTCAGTGTCACAAAACCATTTATGTTACCCCC
TGTTGCAGCCAGCTCCCTTAGGAATGACAGCAGTAGCAGTAATAGGAAAGCCGCAAAGGCCCCTGAAGAC
TCGGGCCTACAATGGACAGCCATGGCATTGCCGGCTCTCATTTCGCTTGTAATTGGCTTTGCTTTTGGAG
CCTTATACTGGAAGAAGAAACAGTCAAGTCTTACAAGGGCAGTTGAAAATATACAGATTAATGAAGAGGA
TAATGAGATAAGTATGTTGCAACAGAAAGAGAGAGAATTTCAAGAGGTGTAA

Translation (273 aa):
MKKTQTWIITCIYLQLLLFNPLVKTKEICGNPVTDNVKDITKLVANLPNDYMITLNYVAGMDVLPSHCWL
RDMVIQLSLSLTTLLDKFSNISEGLSNYSIIDKLGKIVDDLVLCMEENAPKNIKESPKRPETRSFTPEEF
FSIFNRSIDAFKDFMVASDTSDCVLSSTLGPEKDSRVSVTKPFMLPPVAASSLRNDSSSSNRKAAKAPED
SGLQWTAMALPALISLVIGFAFGALYWKKKQSSLTRAVENIQINEEDNEISMLQQKEREFQEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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