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Report for CCDS35986.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35986.2 Public Mus musculus 10 Sf3a2 23 108 98 CCDS HistoryNCBI Gene:20222Re-query CCDS DB by CCDS ID:35986.2Re-query CCDS DB by GeneID:20222See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 35986.1
The 3' coding region has been updated to represent an alternative splice site that is better supported by the available transcript and homology data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35986.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148665.7 ENSMUSP00000117160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148665.7Link to Ensembl Protein Viewer:ENSMUSP00000117160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148665Re-query CCDS DB by Protein ID:ENSMUSP00000117160
Original member Current member NCBI NM_013651.4 NP_038679.3 Accepted alive Link to Nucleotide Sequence:NM_013651.4Link to Protein Sequence:NP_038679.3Re-query CCDS DB by Nucleotide ID:NM_013651Re-query CCDS DB by Protein ID:NP_038679Link to BLAST:NP_038679.3

Chromosomal Locations for CCDS 35986.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80801233 80801358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80801456 80801527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80802398 80802444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80802792 80802901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80803460 80803509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80803583 80803723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80803820 80803888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80803972 80804814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGACTTTCAGCACAGACCTGGAGGCAAGACTGGGAGTGGGGGCGTAGCCTCCTCCTCTGAGAGCAACC
GGGATCGGAGAGAGCGTCTGCGCCAATTGGCCCTGGAAACCATTGACATCAACAAGGACCCGTATTTTAT
GAAGAACCACTTGGGATCCTATGAGTGCAAACTCTGCCTGACTCTGCATAACAATGAGGGGAGCTACCTG
GCCCATACCCAAGGGAAGAAACATCAGACTAACTTGGCCCGGCGAGCTGCCAAGGAGGCCAAAGAAGCCC
CCGCCCAGCCTGCACCGGAGAAGGTCAAGGTGGAGGTGAAGAAGTTTGTGAAGATTGGCCGCCCTGGGTA
CAAAGTGACCAAGCAGAGGGACACAGAGATGGGCCAGCAGAGCCTGCTGTTCCAGATTGACTACCCTGAG
ATCGCAGAGGGTATCATGCCACGCCACCGTTTCATGTCTGCTTATGAGCAGAGGATCGAGCCTCCAGACC
GCCGCTGGCAGTACCTGCTCATGGCTGCTGAGCCCTATGAGACCATTGCTTTCAAGGTGCCAAGCCGGGA
GATTGACAAGGCTGAGGGCAAGTTTTGGACCCACTGGAACAGAGAAACCAAGCAGTTTTTTCTTCAGTTC
CACTTTAAGATGGAGAAGCCCCCAGCACCTCCCAGCCTCCCAGCAGGACCCCCAGGCGTCAAGCGGCCCC
CGCCCCCACTCATGAATGGACTGCCTCCTCGCCCACCACTCCCTGATGCCTTGCCCCCACCTCCACCTGG
TGGCCTGCCTCTCCCTCCTATGCCCCCCACTGGGCCTGCTCCCTCTGGGCCCCCTGGACCTCCCCAGATG
CCCCCACCAGCTCCTGGGGTGCACCCCCCGGCCCCAGTAGTACACCCACCAACATCTGGAGTCCATCCCC
CAGCTCCTGGGGTACACCCCCCAGCACCAGTGGTCCATCCACCAACATCTGGGGTCCATCCCCCAGCCCC
TGGAGTGCACCCACCCACCCCTGGAGTGCACCCACCAGCCCCAGGAGTGCACCCACCAGCTCCAGGTGTC
CACCCACCAGCTCCAGGGGTACACCCCCCAACTCCAGGGGTGCACCCACCAGCTCCAGGGGTGCACCCAC
CAGCTCCAGGGGTGCACCCACCAGCTCCAGGGGTACACCCTCCTCCATCAGCTGGAGTTCATCCTCAGGC
TCCAGGGGTACACCCACCTGCTCCTGCAGTACACCCTCAAGCCCCTGGGGTACACCCCCCAGCCCCTGGG
ATCCACCCTCAGGCACCAGGGGTTCACCCTCAGCCGCCTCCTGGAGTCCACCCTGCTGCCCCGGGGGTCC
ACCCTCAGCCTCCAGGGGTTCACCCCTCAAATCCTGGGGTGCACCCTGCTCCTATGCCCCCCATGCTGAG
GCCCCCACTCCCCTCAGATGGCCCTGGGAACATGCCTCCCCCTCCCCCAGGCAACTGA

Translation (485 aa):
MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYL
AHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYPE
IAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQF
HFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPDALPPPPPGGLPLPPMPPTGPAPSGPPGPPQM
PPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPTPGVHPPAPGVHPPAPGV
HPPAPGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAPG
IHPQAPGVHPQPPPGVHPAAPGVHPQPPGVHPSNPGVHPAPMPPMLRPPLPSDGPGNMPPPPPGN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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