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Report for CCDS35808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35808.1 Public Mus musculus 1 Itpkb 23 108 98 CCDS HistoryNCBI Gene:320404Re-query CCDS DB by CCDS ID:35808.1Re-query CCDS DB by GeneID:320404See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070181.6 ENSMUSP00000069851.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070181.6Link to Ensembl Protein Viewer:ENSMUSP00000069851.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070181Re-query CCDS DB by Protein ID:ENSMUSP00000069851
Original member NCBI NM_001081175.1 NP_001074644.1 Updated not alive Link to Nucleotide Sequence:NM_001081175.1Link to Protein Sequence:NP_001074644.1Re-query CCDS DB by Nucleotide ID:NM_001081175Re-query CCDS DB by Protein ID:NP_001074644
Current member NCBI NM_001081175.2 NP_001074644.1 Accepted alive Link to Nucleotide Sequence:NM_001081175.2Link to Protein Sequence:NP_001074644.1Re-query CCDS DB by Nucleotide ID:NM_001081175Re-query CCDS DB by Protein ID:NP_001074644Link to BLAST:NP_001074644.1

Chromosomal Locations for CCDS 35808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180332311 180334230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180412674 180412773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180413787 180414000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180418154 180418358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180420258 180420359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180421275 180421346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180421675 180421890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGGCTGTGTACTGCTATGCCCTCAATAGCCTGGTGATCATGAACAGCACCAACGAGCTCAAGAGTGGCG
GCCCCCGGCCCAGCGGCAGCGAGACGCCCCAGCCCTCCGGGAGGGCCGCGCTGAGTCCCGGCAGCGTCTT
CAGCCCTGGGAGAGGCGCTTCCTTTCTCTTCCCCCCAGCAGAGTCGCTGTCCCTGGAGGAGCCCGGGAGT
CCTGGGGGCTGGCGCAGCGGCCGGCGCAGGCTGAATAGTAGCAGCGGTAGCGGAGGTGGCAGCAGCAGCA
GCAACAGCAGCAGCAGCAGTGGCGTGGGCAGTCCCAGTTGGGCTGGCCGCCTGCGAGGGGACGCGCAGCA
GGTGGTGGCGGCCCGCATCCTCTCCCCACCTGGGCCAGAGGAGGCCCAGAGGAAGCTGCGGATTCTGCAG
CGCGAGTTGCAAAATGTGCAGGTGAACCAGAAAGTGGGCATGTTCGAGGCGCAAATCCAGGCACAGAGCT
CTGCCATTCAAGCGCCCCGAAGCCCGCGTTTGGGTAGGGCTCGTTCGCCCTCCCCGTGTCCCTTCCGAAG
TAGCAGCCAGCCCCCCGAAAGGGTCTTGGCTCCGTGTTCTCCAAGTGAGGAACGCAGAACAAAGTCCTGG
GGAGAACAATGTACAGAAACCCCAGATACCAACTCTGGAAGGAGAAGCAGACTCAGCACACACCCCTCGA
AGGACAAGGAGGGAGTGGCCCCTCTTTTAGGCCCAGCCAGCCCGACCAGGTTAGGGACTCAGAGTCCATC
TACTTCCGTGAGAATGGAAAGAGGTACCCCGGCCAGTCCCCGCTGTGGCTCACCCACACCCATGGAAACT
GACAAGAGGGTTGCTCCCTCACTGGAGCGCTTTGGAACTAGCTTAACGTTGGCTACTAAAGTGGCAGCTT
CAGCCGCATCCGCTGGACCACACCCTGGACATGATTCTGCCCTCATGGAGACAGGCTGTGAGCTCGGGGG
CATGCGCCCCTGGGAGGCCCAGATGGAGAGACGGGGGCAGTTTCTGGGCAAGGAGACCGGCTCAACCCCA
GAGCCTGTCCGGACCCACATGAGAGAACCCCCTGGAAGGGTGGGAAGAGGAATTCATTCTGTTGGTGGGC
AGGGCTCCTGGACACCTGAAGTCATCAAAAGACCAGAAGAGAGGGCTGTGACTGCCCAAAGCTCAGAGCC
CTCAGAGGACCCCAGATGGTCTAGACTGCCTGTAGACCTGGATTCCGTAGGACCTGAGAAGGGAGGAAAT
AGGATCCCAGGGATGCGAGGGCCCCAGCAGACCCTGGACAGTGAGAGAGAAGGCTCTCCAGCACTGGGCT
TGCTTGGGGGCAGCCAGGCAGCACAGCCAGGGGCTAGGGGTGTGGAGGAAGACGTTCATTATGGCCGAAT
GCTGGAACCTTTACCACCTGGGGAAGTAACAACAAAATTGAAAGAACCCCAGTGCCTCCCTGGGGACAGG
ATGGGAATGCAGCCTGAGAGTTCCATAGTTTGGCCCAGTGCCTTGGAGGAAGCTCCCCTGATCTGGACAC
GTGACACGGGGGTACAGTCGAAGGGGACTTGGGGAAGCCAGCTGCCAGACGGAGATGCTCACCCTAGCTG
CCAAGAGATGCCCCCAGACCAGAAGGACAAGGCCTCCTTAAAAGAGGCCTGCAGCCCCAGCAACATCCCA
GCCATCCCTGCAGTCATCATTACAGATATGGGTGCTCAGGAGGATGGAGGGCTAGAGGAGATCCAAGGAA
GCCCTCGGGGTCCCCTGCCTCTGAGGAAGCTGTCCTCCTCCTCAGCCTCCTCCACTGGCTTCTCCTCTTC
TTACGATGACTCGGAGGAGGACATCTCCAGTGACCCTGAGCGCACGCTGGACCCCAACTCAGCCTTTTTG
CATACCCTGGACCAGCAGAAGCCCAGAGTGAGCAAGTCATGGAGAAAGATAAAGAACATGGTGCAGTGGT
CCCCCTTTGTCATGTCCTTCAAGAAGAAGTACCCCTGGATCCAGCTGGCAGGACATGCAGGGAGCTTCAA
GGCAGCTGCAAATGGCCGCATCCTTAAGAAGCACTGTGAGTCTGAGCAGCGCTGCCTGGACCGGTTAATG
GCGGATGTGCTGAGACCCTTCGTGCCAGCCTACCATGGGGACGTGGTGAAGGATGGGGAACGCTACAACC
AGATGGACGACCTGCTGGCTGACTTCGATTCGCCCTGCGTGATGGACTGCAAGATGGGTGTCAGGACATA
CCTGGAGGAAGAACTCACCAAGGCCCGGAAGAAGCCTAGCTTGCGGAAGGACATGTACCAGAAGATGGTC
GAGGTGGACCCTGAGGCCCCCACTGAAGAGGAGAAAGCCCAGCGAGCTGTGACCAAGCCACGTTACATGC
AGTGGCGGGAAACCATCAGTTCGACAGCCACCCTAGGCTTCAGGATCGAAGGCATCAAGAAGGAAGATGG
CTCTGTGAACCGTGACTTCAAGAAGACCAAAACAAGGGAGCAGGTCACCGAGGCTTTCAGAGAATTCACT
AAGGGAAACCAGAACATCTTGATCGCCTACCGGGACCGGCTGAAGGCCATTCGAGCGACCCTGGAAATCT
CTCCCTTCTTCAAGTGCCACGAGGTCATTGGCAGCTCTCTCCTCTTCATCCATGACAAGAAGGAGCAAGC
CAAGGTGTGGATGATTGACTTTGGGAAAACCACGCCCCTTCCGGAAGGCCAGACCCTACAACACGACGTC
CCCTGGCAGGAGGGGAACCGGGAGGATGGCTACCTCTCAGGGCTGGACAACCTCATCGACATCCTGACGG
AAATGTCCCAGGGCAGCCCACTCACCTGA

Translation (942 aa):
MAVYCYALNSLVIMNSTNELKSGGPRPSGSETPQPSGRAALSPGSVFSPGRGASFLFPPAESLSLEEPGS
PGGWRSGRRRLNSSSGSGGGSSSSNSSSSSGVGSPSWAGRLRGDAQQVVAARILSPPGPEEAQRKLRILQ
RELQNVQVNQKVGMFEAQIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPERVLAPCSPSEERRTKSW
GEQCTETPDTNSGRRSRLSTHPSKDKEGVAPLLGPASPTRLGTQSPSTSVRMERGTPASPRCGSPTPMET
DKRVAPSLERFGTSLTLATKVAASAASAGPHPGHDSALMETGCELGGMRPWEAQMERRGQFLGKETGSTP
EPVRTHMREPPGRVGRGIHSVGGQGSWTPEVIKRPEERAVTAQSSEPSEDPRWSRLPVDLDSVGPEKGGN
RIPGMRGPQQTLDSEREGSPALGLLGGSQAAQPGARGVEEDVHYGRMLEPLPPGEVTTKLKEPQCLPGDR
MGMQPESSIVWPSALEEAPLIWTRDTGVQSKGTWGSQLPDGDAHPSCQEMPPDQKDKASLKEACSPSNIP
AIPAVIITDMGAQEDGGLEEIQGSPRGPLPLRKLSSSSASSTGFSSSYDDSEEDISSDPERTLDPNSAFL
HTLDQQKPRVSKSWRKIKNMVQWSPFVMSFKKKYPWIQLAGHAGSFKAAANGRILKKHCESEQRCLDRLM
ADVLRPFVPAYHGDVVKDGERYNQMDDLLADFDSPCVMDCKMGVRTYLEEELTKARKKPSLRKDMYQKMV
EVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGSVNRDFKKTKTREQVTEAFREFT
KGNQNILIAYRDRLKAIRATLEISPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGKTTPLPEGQTLQHDV
PWQEGNREDGYLSGLDNLIDILTEMSQGSPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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