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Report for CCDS3520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3520.1 Public Homo sapiens 4 TMPRSS11F 24 110 108 CCDS HistoryNCBI Gene:389208Re-query CCDS DB by CCDS ID:3520.1Re-query CCDS DB by GeneID:389208See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356291.3 ENSP00000348639.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356291.3Link to Ensembl Protein Viewer:ENSP00000348639.2Re-query CCDS DB by Nucleotide ID:ENST00000356291Re-query CCDS DB by Protein ID:ENSP00000348639
Original member Current member NCBI NM_207407.2 NP_997290.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207407.2Link to Protein Sequence:NP_997290.2Re-query CCDS DB by Nucleotide ID:NM_207407Re-query CCDS DB by Protein ID:NP_997290Link to BLAST:NP_997290.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997290.2 438 Q6ZWK6 438 100% 0 0

Chromosomal Locations for CCDS 3520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 68053909 68054067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68059326 68059468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68064685 68064944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68068618 68068819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68069969 68070007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68072323 68072486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68073942 68074009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68090523 68090641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68098887 68099038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68129810 68129820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGATGTACGCACCTGTTGAATTTTCAGAAGCTGAATTCTCACGAGCTGAATATCAAAGAAAGCAGCAAT
TTTGGGACTCAGTACGGCTAGCTCTTTTCACATTAGCAATTGTAGCAATCATAGGAATTGCAATTGGTAT
TGTTACTCATTTTGTTGTTGAGGATGATAAGTCTTTCTATTACCTTGCCTCTTTTAAAGTCACAAATATC
AAATATAAAGAAAATTATGGCATAAGATCTTCAAGAGAGTTTATAGAAAGGAGTCATCAGATTGAAAGAA
TGATGTCTAGGATATTTCGACATTCTTCTGTAGGCGGTCGATTTATCAAATCTCATGTTATCAAATTAAG
TCCAGATGAACAAGGTGTGGATATTCTTATAGTGCTCATATTTCGATACCCATCTACTGATAGTGCTGAA
CAAATCAAGAAAAAAATTGAAAAGGCTTTATATCAAAGTTTGAAGACCAAACAATTGTCTTTGACCATAA
ACAAACCATCATTTAGACTCACACCTATTGACAGCAAAAAGATGAGGAATCTTCTCAACAGTCGCTGTGG
AATAAGGATGACATCTTCAAACATGCCATTACCAGCATCCTCTTCTACTCAAAGAATTGTCCAAGGAAGG
GAAACAGCTATGGAAGGGGAATGGCCATGGCAGGCCAGCCTCCAGCTCATAGGGTCAGGCCATCAGTGTG
GAGCCAGCCTCATCAGTAACACATGGCTGCTCACAGCAGCTCACTGCTTTTGGAAAAATAAAGACCCAAC
TCAATGGATTGCTACTTTTGGTGCAACTATAACACCACCCGCAGTGAAACGAAATGTGAGGAAAATTATT
CTTCATGAGAATTACCATAGAGAAACAAATGAAAATGACATTGCTTTGGTTCAGCTCTCTACTGGAGTTG
AGTTTTCAAATATAGTCCAGAGAGTTTGCCTCCCAGACTCATCTATAAAGTTGCCACCTAAAACAAGTGT
GTTCGTCACAGGATTTGGATCCATTGTAGATGATGGACCTATACAAAATACACTTCGGCAAGCCAGAGTG
GAAACCATAAGCACTGATGTGTGTAACAGAAAGGATGTGTATGATGGCCTGATAACTCCAGGAATGTTAT
GTGCTGGATTCATGGAAGGAAAAATAGATGCATGTAAGGGAGATTCTGGTGGACCTCTGGTTTATGATAA
TCATGACATCTGGTACATTGTAGGTATAGTAAGTTGGGGACAATCATGTGCACTTCCCAAAAAACCTGGA
GTCTACACCAGAGTAACTAAGTATCGAGATTGGATTGCCTCAAAGACTGGTATGTAG

Translation (438 aa):
MMYAPVEFSEAEFSRAEYQRKQQFWDSVRLALFTLAIVAIIGIAIGIVTHFVVEDDKSFYYLASFKVTNI
KYKENYGIRSSREFIERSHQIERMMSRIFRHSSVGGRFIKSHVIKLSPDEQGVDILIVLIFRYPSTDSAE
QIKKKIEKALYQSLKTKQLSLTINKPSFRLTPIDSKKMRNLLNSRCGIRMTSSNMPLPASSSTQRIVQGR
ETAMEGEWPWQASLQLIGSGHQCGASLISNTWLLTAAHCFWKNKDPTQWIATFGATITPPAVKRNVRKII
LHENYHRETNENDIALVQLSTGVEFSNIVQRVCLPDSSIKLPPKTSVFVTGFGSIVDDGPIQNTLRQARV
ETISTDVCNRKDVYDGLITPGMLCAGFMEGKIDACKGDSGGPLVYDNHDIWYIVGIVSWGQSCALPKKPG
VYTRVTKYRDWIASKTGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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