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Report for CCDS34453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34453.1 Public Homo sapiens 6 RRP36 24 110 108 CCDS HistoryNCBI Gene:88745Re-query CCDS DB by CCDS ID:34453.1Re-query CCDS DB by GeneID:88745See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244496.6 ENSP00000244496.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244496.6Link to Ensembl Protein Viewer:ENSP00000244496.5Re-query CCDS DB by Nucleotide ID:ENST00000244496Re-query CCDS DB by Protein ID:ENSP00000244496
Original member Current member NCBI NM_033112.4 NP_149103.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033112.4Link to Protein Sequence:NP_149103.1Re-query CCDS DB by Nucleotide ID:NM_033112Re-query CCDS DB by Protein ID:NP_149103Link to BLAST:NP_149103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149103.1 259 Q96EU6-1 259 100% 0 0

Chromosomal Locations for CCDS 34453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43021655 43021784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43024985 43025132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43025263 43025329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43026037 43026141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43027178 43027252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43027360 43027477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43029092 43029228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGCCGGGAGCTAACTACCGCGCCGGGGCCGGGGCCGGGGCCGGGGCCCGACGTCCCCGCGGGGCCCGGG
AC
CGCGAGGAGGACGGCGGGGGCCTGGAGCCCGCGGCCGTGGCCCGCGACCTATTGAGGGGCACATCTAA
C
ATGTCATTTGAGGAGCTGTTGGAATTGCAGAGCCAAGTGGGGACTAAGACGTACAAACAATTGGTAGCT
GGA
AATAGTCCTAAGAAACAAGCTTCTAGACCACCTATCCAAAATGCATGTGTTGCAGATAAGCACAGGC
CT
CTGGAAATGTCAGCCAAGATCCGAGTACCATTTTTACGTCAGGTTGTTCCCATTAGTAAAAAGGTAGC
C
CGGGACCCTCGCTTTGATGATCTGTCAGGGGAATATAATCCTGAGGTGTTTGACAAAACATACCAATTC
TTG
AATGACATCCGAGCGAAAGAGAAAGAGCTTGTGAAAAAACAGTTGAAGAAGCACCTTTCAGGAGAGG
AG
CATGAGAAACTGCAGCAACTGCTTCAGCGAATGGAGCAGCAAGAAATGGCACAGCAGGAACGAAAGCA
A
CAGCAGGAGCTGCACCTGGCCCTGAAGCAAGAACGTCGGGCTCAGGCCCAGCAGGGCCATCGGCCATAC
TTC
CTGAAAAAATCTGAGCAGCGCCAGTTGGCACTAGCTGAGAAGTTCAAGGAGCTGAAACGCAGCAAGA
AA
TTGGAGAACTTCTTGAGTCGAAAGAGGCGACGAAATGCAGGCAAGGACAGGAGACATCTCCCTTTGAG
C
AAAGAGTAA


Translation (259 aa):
MPGANYRAGAGAGAGARRPRGARDREEDGGGLEPAAVARDLLRGTSNMSFEELLELQSQVGTKTYKQLVA
G
NSPKKQASRPPIQNACVADKH
RPLEMSAKIRVPFLRQVVPISKKVARDPRFDDLSGEYNPEVFDKTYQF
L
NDIRAKEKE
LVKKQLKKHLSGEEHEKLQQLLQRMEQQEMAQQERKQQQELHLALKQERRAQAQQGHRPY
F
LKK
SEQRQLALAEKFKELKRSKKLENFLSRKRRRNAGKDRRHLPLSKE



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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