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Report for CCDS33282.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33282.2 Public Homo sapiens 2 CFAP221 24 110 108 CCDS HistoryNCBI Gene:200373Re-query CCDS DB by CCDS ID:33282.2Re-query CCDS DB by GeneID:200373See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 33282.1
The coding region has been updated to represent an alternative splicing pattern, resulting in a longer protein N-terminus that is more supported by the available protein data. It should be noted that the exon combination of the update lacks full-length transcript support in human. None of the currently available human mRNAs can encode the supported full-length protein. Therefore, the exon combination of the update is inferred from alignment of the mouse mRNA, EF632061.1. This is consistent with the orthologous mouse CCDS representation, CCDS48340.1.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33282.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413369.8 ENSP00000393222.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000413369.8Link to Ensembl Protein Viewer:ENSP00000393222.2Re-query CCDS DB by Nucleotide ID:ENST00000413369Re-query CCDS DB by Protein ID:ENSP00000393222
Original member Current member NCBI NM_001271049.2 NP_001257978.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271049.2Link to Protein Sequence:NP_001257978.2Re-query CCDS DB by Nucleotide ID:NM_001271049Re-query CCDS DB by Protein ID:NP_001257978Link to BLAST:NP_001257978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257978.2 840 Q4G0U5-1 840 100% 0 0

Chromosomal Locations for CCDS 33282.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119546132 119546270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119549085 119549185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119559689 119559775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119559928 119560026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119562014 119562114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119587119 119587222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119601218 119601377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119604672 119604792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119604876 119604987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119605181 119605289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119608502 119608589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119611653 119611742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119615611 119615709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119625583 119625688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119627653 119627786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119629875 119629955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119630570 119630677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119630767 119630901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119638259 119638417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119639781 119639872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119646958 119647050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119651974 119652069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119656362 119656470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGGCAGTGGTGAAAACCCCCAGCAGAGGACTAAAGAATGCTAAAGAACCCTTTAATAATGCATCACCCC
ATCTCTTGAAGAACCTAGTGGAGGAGCCGAAAAAAAGAAAAGAAGTACCTAATCACCTCCTAGAATCAAA
GGTTTATGCAAAACTTGTGAATAATAAGGTCATACAGGCAAGACCTGGCATAATACATTTTGGAGGCTAT
CAAGTAGAAAAACAACACCAACAGATTCTGCATCTGGTCAATGTTTCCAATGAAGACACACGTGTTCATA
TTTTACCCCCGCAAACCAAATACTTTGAGATCAATTATGTAAGAAAGGAACACCACCTGGTCCCTGGCTT
GTCCCTCACGGTCACCGTTACATTTTCTCCAGATGAGTGGCGATACTATTATGACTGCATCCGTGTTCAC
TGTAAGGGAGATGACACTTTGCTTGTTCCTATTCATGCCTATCCAGTCATGAACTCACTAGACTTTCCTT
CATTTATAAATCTGTCAAATGTTCTACTTGGTGAAAGCAAAACTTATGTTATTCCTTTGCAGTGCAGCTG
CCCTGTAGATTTTGAGTTTTATATCACCTTGATTCAGTCTCATCAAGCCTTTGCTATTGAGCCAACATCA
GGAATAATTCCGGCTAATGGGAAGATGACTGTGACTATTAAGTTTACACCCTTTCAGTATGGGACTGCAC
AAATAAAAATGCAGTTATGGATTTCGCAGTTCAACTCTCAACCATACGAATGTGTCTTCACCGGAACATG
CTATCCCAACATGGCCTTACCATTAGAAGAGTTTGAAAGGTTGAATACCCTTTCTAAGAAAGTAAACGTT
CCTCCAGAAAAAGCAATGATGCATATAAATTTTCACCGACCGCCAGCGAAGCCGAAGCCTCAGAAGGTGA
AGGAAATTGAGTACCAGAACCTCAGATTTCCAGTAGATTTATCGAATCCATTTGCTGTGGCAACTGTTTT
AAACCAAGAACCAGGAAAATTGAAGATTAAAGAATTAAGAGAAGTTTTGGACCAGGGCACTGAAATTTCA
AAAACGAGACAGATGAAGGAGGCACTCTTTGAACAGAAAGTCAGACAGGACATTCACGAAGAGATGGAAA
ATCATCTTAAGTGGCAGGTGCACCTTGGTAAAGATCCTATGTCTTTTAAACTTAAAAAAGAGCTTACTGA
AGAGTGGCAAAAAGCATGTGCCAAATATAAGCTAGACAGAGGAGATCCTATTTTGGATGAGGAATTTCAG
CGACTTAAAACAGAAGTTAGCCATAAACGGGTTGTTCGCAATCAAGAAGAGAAAATCAAGGAATTTCATC
CTACTTTTGATCCACTCATTAATAACACTTGGCTCAGCAGGTCCAGGGCACAAAAACGGTTTCAACAAGT
AGCACGCAAGGTCATGATTCAGGGACGATTATTCAATATGCTGAGTGCTGTTCGTGAAATGGACAAAGAG
AGTATACTGAGAAAGATTGGCCAAGCAAAACAATCGATAGCACAAGAGGCGAATTTCTTCAAATTCTTCC
TGAGGCGGATCAGTCAGGATGATTATACCAGCCGGTTCTCTGTGTCGCCCAAGGAGGTGCTGCCCTTCGC
TTTCCCAGACTGCAGCCCACCCCAGGACTCCAACGAGTTGGCTCCTGATGGCCTTGGACTGGTCCCAATT
AAGTCTTCAGAAGTTCAAATCAAGCAGAGTTATTCCTTCTTCAATCTGCAGGTTCCTCAACTGTACAAAA
TTAAGAGATATCAGCCATTCTCTGTCCACAAGTCTTCAACAAGTTACAGACCTCAAAAGCTTGCCCGAGC
CCTAAAGCAAGGAGCTGAGGATGAAGTCACCACCATCACAGCCCTTCCGAAACAGGACTCCACAACTCAG
CTCTCTGGCAAAACATCAGTCTTGAGCATGAAACCACCTGAGGCCTTAGCCATGTCTCTAGATTATGATC
CTCTGTATGTTTTTAATCCCAACCCAGGATTATTTGCTGTAATGCATCCTCTGACCTATGCAGAAACGTT
GATAGATTACCATCTATGCTCTCACCCCAAGTACAAATTCACCAAAGAGTCCCGCCACGGGTCCAGCATT
CCTGTCACCCAAAAGCAGTTTCTCCATCACACGGACATTATTCCCGGAATAATGCACTGGAAAAGCTTCC
AGTCCCTGGTTCTCTCCTCCCTGCCGGACCCCTCCAAGATGGAGACCACAAAGAGCTGCGATTCCTTCAA
TTCATTTATGCTTCCGATAGACGTCCCTGCCATCCTTGATGCCTTACCAGAAGAGGACAGACTAGAAACA
GTAGAACGTGAGCTCTGTGAGCAGAATGTAGAAGTTATGTTGACTCCAGAAATGATCAAAGTGGAATTCC
CTATGTTGAACTACAAGGACATCAGGAAGGAGAAAGAAGTGAAAGATCAAGCACAACCAGCAGAGAAGGC
CGGAGAGAAGCTGCTCGAGGAGATGAGGAACCTGCGGGGCAAAGCACTCAACACATACCTGATTCTAGAA
TGA

Translation (840 aa):
MAVVKTPSRGLKNAKEPFNNASPHLLKNLVEEPKKRKEVPNHLLESKVYAKLVNNKVIQARPGIIHFGGY
QVEKQHQQILHLVNVSNEDTRVHILPPQTKYFEINYVRKEHHLVPGLSLTVTVTFSPDEWRYYYDCIRVH
CKGDDTLLVPIHAYPVMNSLDFPSFINLSNVLLGESKTYVIPLQCSCPVDFEFYITLIQSHQAFAIEPTS
GIIPANGKMTVTIKFTPFQYGTAQIKMQLWISQFNSQPYECVFTGTCYPNMALPLEEFERLNTLSKKVNV
PPEKAMMHINFHRPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQGTEIS
KTRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEEFQ
RLKTEVSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKE
SILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRFSVSPKEVLPFAFPDCSPPQDSNELAPDGLGLVPI
KSSEVQIKQSYSFFNLQVPQLYKIKRYQPFSVHKSSTSYRPQKLARALKQGAEDEVTTITALPKQDSTTQ
LSGKTSVLSMKPPEALAMSLDYDPLYVFNPNPGLFAVMHPLTYAETLIDYHLCSHPKYKFTKESRHGSSI
PVTQKQFLHHTDIIPGIMHWKSFQSLVLSSLPDPSKMETTKSCDSFNSFMLPIDVPAILDALPEEDRLET
VERELCEQNVEVMLTPEMIKVEFPMLNYKDIRKEKEVKDQAQPAEKAGEKLLEEMRNLRGKALNTYLILE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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