NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31316.1 Public Homo sapiens 10 LRRC27 24 110 108 CCDS HistoryNCBI Gene:80313Re-query CCDS DB by CCDS ID:31316.1Re-query CCDS DB by GeneID:80313See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368613.8 ENSP00000357602.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368613.8Link to Ensembl Protein Viewer:ENSP00000357602.4Re-query CCDS DB by Nucleotide ID:ENST00000368613Re-query CCDS DB by Protein ID:ENSP00000357602
Original member Current member EBI ENST00000368614.8 ENSP00000357603.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368614.8Link to Ensembl Protein Viewer:ENSP00000357603.3Re-query CCDS DB by Nucleotide ID:ENST00000368614Re-query CCDS DB by Protein ID:ENSP00000357603
Original member Current member NCBI NM_001143757.2 NP_001137229.1 Accepted alive Link to Nucleotide Sequence:NM_001143757.2Link to Protein Sequence:NP_001137229.1Re-query CCDS DB by Nucleotide ID:NM_001143757Re-query CCDS DB by Protein ID:NP_001137229Link to BLAST:NP_001137229.1
Original member Current member NCBI NM_030626.3 NP_085129.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030626.3Link to Protein Sequence:NP_085129.1Re-query CCDS DB by Nucleotide ID:NM_030626Re-query CCDS DB by Protein ID:NP_085129Link to BLAST:NP_085129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137229.1 530 Q9C0I9-1 530 100% 0 0
NP_085129.1 530 Q9C0I9-1 530 100% 0 0

Chromosomal Locations for CCDS 31316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 132333525 132333734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132337565 132337695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132342213 132342271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132344498 132344650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132347984 132348356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132351607 132351753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132355790 132355886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132361457 132361575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132365424 132365550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132375066 132375242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAGGGAAGCAGCTCCTACGAAGTTCCCTCTGTGGCTGCTGCTGATCTGGAGGAGGGTGCTGGTCAGA
CTAGGAGCTTGCCTGCCACCCCCTCCAAAGATGTTCACAAGGGTGTTGGAGGCATCATCTTTTCCTCCTC
ACCGATTTTAGACTTGAGTGAAAGTGGTCTGTGCCGTTTGGAGGAGGTCTTTAGAATCCCCAGCCTTCAA
CAATTGCATCTGCAAAGGAATGCCCTGTGTGTGATTCCTCAAGATTTCTTTCAGTTGCTTCCGAACCTGA
CTTGGCTGGACCTCCGGTACAATAGAATTAAAGCGCTTCCTTCTGGGATTGGAGCTCACCAGCATTTGAA
AACTTTGCTTTTAGAAAGAAATCCTATCAAAATGTTACCTGTGGAGCTGGGGAGCGTAACCACGCTGAAA
GCACTGAACCTAAGACACTGCCCTCTGGAATTCCCTCCTCAGCTCGTTGTGCAGAAGGGATTGGTGGCTA
TCCAGCGCTTCCTGCGGATGTGGGCAGTAGAACACTCTCTCCCCAGAAATCCAACTTCTCAAGAGGCTCC
ACCGGTTAGAGAGATGACCCTCCGTGACCTCCCGAGCCCAGGACTGGAGTTGTCTGGAGACCACGCGTCT
AACCAAGGAGCTGTGAACGCTCAGGACCCAGAGGGGGCTGTGATGAAAGAGAAGGCCAGCTTTCTCCCAC
CTGTGGAAAAGCCAGACCTGAGTGAACTCAGGAAGTCTGCGGACTCCTCAGAGAACTGGCCCAGCGAGGA
GGAGATCAGGCGCTTTTGGAAGCTGAGGCAGGAGATTGTTGAGCACGTGAAGGCAGACGTTCTGGGAGAT
CAGCTCTTGACGAGGGAATTACCTCCAAATCTCAAGGCGGCCTTGAACATTGAGAAAGAACTACCAAAGC
CAAGACACGTTTTCAGAAGGAAGACAGCCTCCTCCAGGAGCATCTTACCCGACCTCTTGTCACCGTACCA
AATGGCGATCCGAGCAAAAAGACTGGAAGAGAGCCGAGCGGCGGCGCTCCGAGAGCTCCAGGAGAAGCAG
GCTCTGATGGAGCAGCAGAGACGAGAGAAAAGGGCACTGCAGGAGTGGAGAGAGCGAGCCCAGAGGATGA
GGAAGAGGAAGGAAGAGCTCAGCAAACTCCTGCCTCCGCGGAGGAGCATGGTGGCATCAAAGATTCCCTC
TGCCACAGATCTGATAGATAACAGGAAAGTACCACTGAATCCGCCTGGAAAAATGAAACCAAGCAAAGAG
AAATCGCCACAAGCAAGTAAAGAAATGAGTGCCCTGCAGGAGAGAAATTTAGAAGAGAAGATAAAACAGC
ACGTCCTCCAAATGCGTGAGCAAAGAAGATTCCATGGCCAGGCCCCACTGGAGGAGATGAGGAAGGCTGC
CGAGGATCTGGAAATTGCCACAGAGCTACAGGATGAAGTATTGAAGCTAAAATTGGGATTAACCTTGAAC
AAAGATCGTCGACGGGCGGCCCTCACTGGAAACCTTTCGCTTGGCCTGCCGGCAGCACAGCCTCAAAATA
CATTTTTTAACACAAAATATGGAGAATCAGGAAATGTTCGCAGATACCAGTGA

Translation (530 aa):
MEGSSSYEVPSVAAADLEEGAGQTRSLPATPSKDVHKGVGGIIFSSSPILDLSESGLCRLEEVFRIPSLQ
QLHLQRNALCVIPQDFFQLLPNLTWLDLRYNRIKALPSGIGAHQHLKTLLLERNPIKMLPVELGSVTTLK
ALNLRHCPLEFPPQLVVQKGLVAIQRFLRMWAVEHSLPRNPTSQEAPPVREMTLRDLPSPGLELSGDHAS
NQGAVNAQDPEGAVMKEKASFLPPVEKPDLSELRKSADSSENWPSEEEIRRFWKLRQEIVEHVKADVLGD
QLLTRELPPNLKAALNIEKELPKPRHVFRRKTASSRSILPDLLSPYQMAIRAKRLEESRAAALRELQEKQ
ALMEQQRREKRALQEWRERAQRMRKRKEELSKLLPPRRSMVASKIPSATDLIDNRKVPLNPPGKMKPSKE
KSPQASKEMSALQERNLEEKIKQHVLQMREQRRFHGQAPLEEMRKAAEDLEIATELQDEVLKLKLGLTLN
KDRRRAALTGNLSLGLPAAQPQNTFFNTKYGESGNVRRYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH