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Report for CCDS30550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30550.1 Public Homo sapiens 1 KLHL17 24 110 108 CCDS HistoryNCBI Gene:339451Re-query CCDS DB by CCDS ID:30550.1Re-query CCDS DB by GeneID:339451See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338591.8 ENSP00000343930.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338591.8Link to Ensembl Protein Viewer:ENSP00000343930.3Re-query CCDS DB by Nucleotide ID:ENST00000338591Re-query CCDS DB by Protein ID:ENSP00000343930
Original member Current member NCBI NM_198317.3 NP_938073.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198317.3Link to Protein Sequence:NP_938073.1Re-query CCDS DB by Nucleotide ID:NM_198317Re-query CCDS DB by Protein ID:NP_938073Link to BLAST:NP_938073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938073.1 642 Q6TDP4 642 100% 0 0

Chromosomal Locations for CCDS 30550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 960694 960800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 961293 961552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 961629 961750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 961826 962047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 962355 962471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 962704 962917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 963109 963253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 963337 963504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 963920 964008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 964107 964180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 964349 964530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 964963 965191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGCAGCCCCGCAGCGAGCGCCCGGCCGGCAGGACGCAGAGCCCGGAGCACGGCAGCCCGGGGCCCGGGC
CCGAGGCGCCGCCGCCTCCACCGCCGCAGCCGCCGGCCCCCGAGGCAGAGCGCACGCGGCCCCGGCAGGC
TCGGCCCGCAGCCCCCATGGAGGGAGCCGTGCAGCTGCTGAGCCGCGAGGGCCACAGCGTGGCCCACAAC
TCCAAGCGGCACTACCACGATGCCTTCGTGGCCATGAGCCGCATGCGCCAGCGCGGCCTCCTGTGCGACA
TCGTCCTGCACGTGGCTGCCAAGGAGATCCGTGCGCACAAAGTGGTGCTGGCCTCCTGCAGCCCCTACTT
CCACGCCATGTTCACAAATGAGATGAGCGAGAGCCGCCAGACCCACGTGACGCTGCACGACATCGACCCT
CAGGCCTTGGACCAGCTGGTGCAGTTTGCCTACACGGCTGAGATTGTGGTGGGCGAGGGCAATGTGCAGA
CTCTGCTCCCAGCCGCCAGTCTCCTGCAGCTGAATGGCGTCCGAGACGCTTGCTGCAAGTTTCTACTGAG
TCAGCTCGACCCCTCCAACTGCCTGGGTATCCGGGGCTTTGCCGATGCGCACTCCTGCAGCGACCTGCTC
AAGGCCGCCCACAGGTACGTGCTGCAGCACTTCGTGGACGTGGCCAAGACCGAGGAGTTTATGCTGCTGC
CCCTGAAACAGGTTCTGGAACTGGTCTCTAGCGACAGCCTGAACGTGCCTTCAGAGGAGGAGGTCTACCG
AGCCGTCCTGAGCTGGGTGAAACACGACGTGGACGCCCGCAGGCAGCATGTCCCACGGCTCATGAAGTGT
GTGCGGCTGCCCTTGCTGAGCCGCGACTTCCTGCTGGGCCACGTGGATGCCGAGAGCCTGGTGAGGCACC
ACCCTGACTGCAAGGACCTCCTCATCGAGGCCCTGAAGTTCCACCTGCTGCCTGAGCAGAGGGGCGTCCT
AGGCACCAGCCGCACACGTCCCCGGCGCTGCGAGGGGGCCGGGCCTGTGCTTTTTGCTGTGGGCGGCGGG
AGCCTGTTTGCCATCCACGGAGACTGTGAGGCCTACGACACGCGCACCGACCGCTGGCACGTGGTGGCCT
CCATGTCCACGCGCCGGGCCCGGGTGGGAGTGGCTGCGGTGGGGAACCGGCTCTATGCTGTGGGCGGCTA
TGATGGGACCTCAGACCTGGCTACCGTGGAGTCCTACGACCCCGTGACTAACACGTGGCAGCCGGAGGTG
TCCATGGGCACAAGGCGAAGCTGCCTGGGTGTGGCCGCCTTGCATGGACTCCTGTACTCGGCCGGCGGCT
ATGACGGGGCCTCCTGCCTGAACAGTGCTGAACGCTACGACCCCCTGACCGGAACGTGGACGTCCGTCGC
TGCCATGAGCACCCGGAGGCGCTATGTGCGAGTGGCCACGCTTGATGGGAACCTGTATGCTGTGGGCGGC
TACGACAGCTCCTCACACCTGGCCACTGTGGAGAAGTATGAGCCCCAGGTGAACGTGTGGTCGCCCGTGG
CGTCCATGCTGAGCCGACGCAGCTCAGCGGGCGTGGCCGTGCTGGAGGGTGCCCTGTACGTGGCAGGGGG
CAACGACGGCACCAGCTGCCTCAACTCGGTAGAGAGATACAGTCCAAAGGCTGGAGCCTGGGAAAGCGTG
GCGCCCATGAATATCCGCAGGAGCACGCATGACCTGGTGGCCATGGACGGATGGTTGTACGCCGTGGGGG
GTAACGACGGTAGCTCCAGCCTCAACTCCATCGAGAAGTACAACCCGAGGACCAACAAGTGGGTGGCCGC
ATCCTGCATGTTCACCCGGCGCAGCAGTGTGGGTGTGGCGGTGCTGGAGCTGCTCAATTTCCCGCCGCCA
TCCTCCCCGACGCTGTCCGTGTCCTCCACCAGCCTCTGA

Translation (642 aa):
MQPRSERPAGRTQSPEHGSPGPGPEAPPPPPPQPPAPEAERTRPRQARPAAPMEGAVQLLSREGHSVAHN
SKRHYHDAFVAMSRMRQRGLLCDIVLHVAAKEIRAHKVVLASCSPYFHAMFTNEMSESRQTHVTLHDIDP
QALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADAHSCSDLL
KAAHRYVLQHFVDVAKTEEFMLLPLKQVLELVSSDSLNVPSEEEVYRAVLSWVKHDVDARRQHVPRLMKC
VRLPLLSRDFLLGHVDAESLVRHHPDCKDLLIEALKFHLLPEQRGVLGTSRTRPRRCEGAGPVLFAVGGG
SLFAIHGDCEAYDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTSDLATVESYDPVTNTWQPEV
SMGTRRSCLGVAALHGLLYSAGGYDGASCLNSAERYDPLTGTWTSVAAMSTRRRYVRVATLDGNLYAVGG
YDSSSHLATVEKYEPQVNVWSPVASMLSRRSSAGVAVLEGALYVAGGNDGTSCLNSVERYSPKAGAWESV
APMNIRRSTHDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAVLELLNFPPP
SSPTLSVSSTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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