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Report for CCDS3054.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3054.2 Public Homo sapiens 3 EFCC1 24 110 108 CCDS HistoryNCBI Gene:79825Re-query CCDS DB by CCDS ID:3054.2Re-query CCDS DB by GeneID:79825See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3054.1
The coding region has been updated to significantly extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3054.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436022.2 ENSP00000414597.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436022.2Link to Ensembl Protein Viewer:ENSP00000414597.3Re-query CCDS DB by Nucleotide ID:ENST00000436022Re-query CCDS DB by Protein ID:ENSP00000414597
Original member Current member NCBI NM_024768.3 NP_079044.2 Accepted alive Link to Nucleotide Sequence:NM_024768.3Link to Protein Sequence:NP_079044.2Re-query CCDS DB by Nucleotide ID:NM_024768Re-query CCDS DB by Protein ID:NP_079044Link to BLAST:NP_079044.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079044.2 598 Q9HA90-1 598 100% 0 0

Chromosomal Locations for CCDS 3054.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129001629 129002324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129003794 129004077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129030703 129030860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129032822 129032966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129034164 129034329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129036977 129037117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129038831 129038900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129039712 129039848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGAGCCGGTCAGCACGGGCGCGGAGGCCGGCATGGAGGGCGCGGGAGGTGACCCGTACCGGCGACCTG
CGCGGCGCACGCAGTGGCTGCTGAGCGCCCTGGCGCACCACTACGGGCTGGACCGCGGCGTGGAGAACGA
GATCGTGGTGCTGGCCACCGGCCTGGACCAGTACCTGCAGGAGGTCTTCCACCACCTGGACTGCCGCGGC
GCCGGCCGTCTGCCCCGCGCCGACTTCCGAGCGCTCTGCGCTGTGCTGGGGCTGCGCGCGGAGGGGGCCA
CCACGGCCGGGCAGGCAGCAGGTGACGGGAACTCCAGAGATGTGACCCCCGGGGATGCGGCCGCTGAGTT
GGCCACGGACGGGGACTCAGATACCGATGAAGAGGCGCGCCTGGCGCTGCGCGCCGAGCCGCCGGAGCTC
ACCTTCCGCCAGTTCCACGCGCGCCTCTGTGGCTACTTCGGCACCCGTGCGGGGCCCCGGCTGCCCCGCG
GCGCTCTCAGCGAGCACATCGAGACGCAGATCCGCCTGCGCCGTCCGCGCCGCCGCCGCCGCCCGCCCTG
CGCGCCTGGCCCCGACAGCGGTCCTGACTGTGAGCGCGTTGCGCGGCTGGAGGAGGAGAATAGCAGCTTG
CGCGAGTTGGTGGAGGACCTGCGCGCCGCGCTGCAGAGCAGTGATGCGCGCTGCCTAGCACTGCAGGTCG
GACTCTGGAAGAGCCAGGCGAGCACCCACGAGATGGGGCACGGCGGGCCGGAGGCTGCGGTGCGGGAGCT
GCGTCAGGCGCAGGGCGCCCTGGCTGCGGCGGAGGCCCGCGCTGGGCGGCTGCGCCGTGGCCAGGCCGAG
GTGCGGCGGCGCGCGGAGGAGGCCCGGCAGGTGGTGCTGCGCAGCCTGCACCGCGTGCGAGAGCTGGAGG
CGCTGGCGCAACAGGTGCCCGGCTTGCAGCGCTGGGTGCGGCGGCTGGAGGCGGAGCTGCAACGCTACAG
GTCAGAGGATTCCCAGCTCCCAACCCCGCAGCTAGCCAACCCAGAGCCAGGAGACAAGAGTAATGAACCT
GAAGATGCTGGGACCAGAGACCCAGACCCCACTCCAGAGGGAGCCTGGCAGTCAGACAGCAGCTCTGGAA
GCAGAGCCCTGGATGAAGTGGACGAGCAGCTGTTCCGCTCCGTGGAGGGCCAGGCCGCCTCTGACGAGGA
GGAGGTGGAGGAGGAGAGGTGGCAGGAGGAGAAGAAGACGCCGGCAGCCGAGGCCAAGACACTGCTGGCC
CGGCTCTCCAGCTGCAGAGGCAGGTGTGATGACCAGACGGCGGAGAAGCTCATGACTTACTTTGGTCACT
TCGGCGGTGCCAACCATGCCCATACCCTGGGGGAGCTGGAGGCCTGCATTGCCATGCTGGTGGAGCAGCT
GAGGACTCAGGGCTGCGGTGGGAGGACCCTGGGGACCTCTGAGGAGGAGGCAGAGTTGCAGCAGAAGGTG
GAAGAGAATGAGCACCTGAGGCTGGAGCTGCAGATGGTAGAGACCGAGAGGGTGCGGCTGTCCCTGCTGG
AGGAGAAGCTGGTGGACGTGCTGCAGCTCCTGCAGAGGCTCCGGGACCTGAACATATCGAAAAGAGCCCT
GGGGAAGATTTTGCTGAGCACGCTGGACGCTTTCAGGGACCCCACCCACGAGGGAAGGCCCAGCCCTGCA
GCCATCCTGGATGCCCTGCACCAAGCCTTGGCTGCCTGCCAGCTGTTGCGGAGACAGCCCTCGGCACCAG
CCTCTGCAGCAGCTGCGCTCACCAACCCCCTCCTCGTCTCCTGCTGA

Translation (598 aa):
MEPVSTGAEAGMEGAGGDPYRRPARRTQWLLSALAHHYGLDRGVENEIVVLATGLDQYLQEVFHHLDCRG
AGRLPRADFRALCAVLGLRAEGATTAGQAAGDGNSRDVTPGDAAAELATDGDSDTDEEARLALRAEPPEL
TFRQFHARLCGYFGTRAGPRLPRGALSEHIETQIRLRRPRRRRRPPCAPGPDSGPDCERVARLEEENSSL
RELVEDLRAALQSSDARCLALQVGLWKSQASTHEMGHGGPEAAVRELRQAQGALAAAEARAGRLRRGQAE
VRRRAEEARQVVLRSLHRVRELEALAQQVPGLQRWVRRLEAELQRYRSEDSQLPTPQLANPEPGDKSNEP
EDAGTRDPDPTPEGAWQSDSSSGSRALDEVDEQLFRSVEGQAASDEEEVEEERWQEEKKTPAAEAKTLLA
RLSSCRGRCDDQTAEKLMTYFGHFGGANHAHTLGELEACIAMLVEQLRTQGCGGRTLGTSEEEAELQQKV
EENEHLRLELQMVETERVRLSLLEEKLVDVLQLLQRLRDLNISKRALGKILLSTLDAFRDPTHEGRPSPA
AILDALHQALAACQLLRRQPSAPASAAAALTNPLLVSC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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