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Report for CCDS2992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2992.1 Public Homo sapiens 3 POPDC2 24 110 108 CCDS HistoryNCBI Gene:64091Re-query CCDS DB by CCDS ID:2992.1Re-query CCDS DB by GeneID:64091See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264231.7 ENSP00000264231.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264231.7Link to Ensembl Protein Viewer:ENSP00000264231.3Re-query CCDS DB by Nucleotide ID:ENST00000264231Re-query CCDS DB by Protein ID:ENSP00000264231
Original member Current member NCBI NM_022135.4 NP_071418.2 Accepted alive Link to Nucleotide Sequence:NM_022135.4Link to Protein Sequence:NP_071418.2Re-query CCDS DB by Nucleotide ID:NM_022135Re-query CCDS DB by Protein ID:NP_071418Link to BLAST:NP_071418.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071418.2 364 Q9HBU9-1 364 100% 0 0

Chromosomal Locations for CCDS 2992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 119642476 119642561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119648260 119648668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119654505 119654613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119659933 119660423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGAGCGCCAACAGCAGCAGAGTGGGCCAGCTTCTCTTGCAGGGTTCAGCGTGCATTAGGTGGAAGCAGG
ATGTGGAAGGGGCTGTCTACCACCTAGCCAACTGCCTCTTACTCCTGGGCTTCATGGGGGGCAGTGGGGT
GTATGGATGCTTCTATCTTTTTGGCTTCCTGAGTGCAGGTTACCTGTGCTGCGTGCTGTGGGGCTGGTTC
AGTGCCTGTGGCCTGGACATTGTTCTTTGGAGCTTCCTGCTGGCTGTGGTCTGCCTGCTCCAGCTGGCAC
ACCTGGTATACCGCCTGCGTGAGGACACCCTCCCTGAGGAGTTTGACCTCCTCTACAAGACGCTGTGCCT
GCCCTTGCAGGTGCCCCTACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTG
GCCACTGAACAGACCTATGCTGTGGAGGGTGAGACACCCATCAACCGCCTGTCCCTGCTGCTCTCTGGCC
GGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACATCTTTCCATACCAGTTCATGGACTCTCCTGA
GTGGGAATCACTACAGCCTTCTGAGGAGGGGGTGTTCCAGGTCACTCTGACTGCTGAGACCTCATGTAGC
TACATTTCCTGGCCCCGGAAAAGTCTCCATCTTCTTCTGACCAAAGAGCGATACATCTCCTGCCTCTTCT
CGGCTCTGCTGGGATATGACATCTCAGAGAAGCTCTACACTCTCAATGACAAGCTCTTTGCTAAGTTTGG
GCTGCGCTTTGACATCCGCCTTCCCAGCCTCTACCATGTCCTGGGTCCCACTGCTGCAGATGCTGGACCA
GAGTCCGAGAAGGGTGATGAGGAAGTCTGTGAGCCAGCTGTGTCCCCTCCTCAGGCCACACCCACCTCTC
TCCAGCAAACACCCCCTTGTTCTACCCCTCCAGCTACCACCAACTTTCCTGCACCTCCTACCCGGGCCAG
GTTGTCCAGGCCAGACAGTGGCATACTGGCTTCTAGAATTCCTCTCCAGAGCTACTCTCAAGTTATATCC
AGGGGACAGGCCCCTTTGGCTCCAACCCACACGCCTGAACTTTAA

Translation (364 aa):
MSANSSRVGQLLLQGSACIRWKQDVEGAVYHLANCLLLLGFMGGSGVYGCFYLFGFLSAGYLCCVLWGWF
SACGLDIVLWSFLLAVVCLLQLAHLVYRLREDTLPEEFDLLYKTLCLPLQVPLQTYKEIVHCCEEQVLTL
ATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLQPSEEGVFQVTLTAETSCS
YISWPRKSLHLLLTKERYISCLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGPTAADAGP
ESEKGDEEVCEPAVSPPQATPTSLQQTPPCSTPPATTNFPAPPTRARLSRPDSGILASRIPLQSYSQVIS
RGQAPLAPTHTPEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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