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Report for CCDS29773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29773.1 Public Mus musculus 19 Hectd2 23 108 98 CCDS HistoryNCBI Gene:226098Re-query CCDS DB by CCDS ID:29773.1Re-query CCDS DB by GeneID:226098See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047247.11 ENSMUSP00000042646.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047247.11Link to Ensembl Protein Viewer:ENSMUSP00000042646.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047247Re-query CCDS DB by Protein ID:ENSMUSP00000042646
Original member Current member NCBI NM_172637.3 NP_766225.2 Accepted alive Link to Nucleotide Sequence:NM_172637.3Link to Protein Sequence:NP_766225.2Re-query CCDS DB by Nucleotide ID:NM_172637Re-query CCDS DB by Protein ID:NP_766225Link to BLAST:NP_766225.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766225.2 774 Q8CDU6 774 100% 0 0

Chromosomal Locations for CCDS 29773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36554784 36554915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36569373 36569502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36583936 36584074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36584896 36584998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36585444 36585533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36587366 36587430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36595209 36595254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36597077 36597186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36598887 36599035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36599596 36599719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36601432 36601528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36604250 36604357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36605168 36605300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36606386 36606474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36609265 36609423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36611364 36611438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36612144 36612231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36612317 36612423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36614348 36614463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36615500 36615643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36618724 36618844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGAGTGAGGCGGCTCGGGATCTCTCGCCCGGAGCGCCGCCGGCGGTAGCCGCGGCCGCCCCGGAGGAGA
GGAAGGGGAAAGAACCGGAGCGCGAGAAGCTGCCGCCCATCGTGACGGCCGGCGCAGCCGCGGGCTTGGA
CAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTTGTCTCGACTGTCACCCAGAAGAAGGAAGCT
GCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACATCAGGAATGTGAGAGACCTACCACCAA
TTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCC
CCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGAGGAAGATTTAGAAAAAGCT
GAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAA
ACACTGCATTTAAGAAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTT
GGTGAATGCTGTGTTTGATGCCTTACTTAATACTCCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATC
ATTAACAGCTTGTTACAAGAATGGAAAGGTCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGT
TACAGAATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTAC
CTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAAATTATCCCAGAAGAAATTCAAGCAA
CTGGTAGAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTC
TAACGAAGTGTACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTAACACTGCCAACAATTT
GGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAA
GAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTT
CTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGGCAAAG
TCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGG
AGGACACATCTGGTTAGCGACTCACTTGATGAGTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGA
AAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAAT
TCGCCAGATTTTCCATCCAGATTATGGCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGC
AGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATTCTCATGGGACTAGCTGTTTATAACA
GCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAG
TGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTGAATTG
GCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAGG
TTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTAC
CAATCAGAATAGAAGAGAGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAA
TTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATGCTGCTTCGTCCAGAAG
AAGTAGAAATCCTGGTTTGTGGCAGTCCTGAACTGGATATGCATGCACTGCAGAGGAGCACACAGTACGA
CGGCTATGCGAAGACAGACCTGACCATACGATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTT
CAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATT
TTAAAATTTCAAAGAATGAAACTTCTACTAACTGGTTACCTGTGGCACACACTTGTTTCAATCAACTCTG
CCTTCCCCCATACAAGAGCAAAAAAGATCTGAAACAGAAACTGATTATTGGAATTTCAAATTCAGAAGGT
TTTGGACTTGAATAA

Translation (774 aa):
MSEAARDLSPGAPPAVAAAAPEERKGKEPEREKLPPIVTAGAAAGLDRGSKGQISTFSSFVSTVTQKKEA
AENRSSPTHLALPNIRNVRDLPPICLDVRQKQRMSVEALPSEVKVPPLPEPSLPSQPKTVKDFEEDLEKA
EATGNWKTVHAFYITAFDSFTELNTAFKKDATASFNTIEDSGLNANLVNAVFDALLNTPQDIQKSVLKGI
INSLLQEWKGPRTKDDLRAYFILLQNPQFNITSTYVIYAHLLRQIATLVEADHHFLVHWLKKLSQKKFKQ
LVERLLQFVSLRLFPAKPEEFPPLTKCTWWIPSAAKVLALLNTANNLVHPPLVPYTDFYNSTLDHIDLME
EYHTWQSFGNSHRFSFCQYPFVISIAAKKIIIQRDSEQQMISIARQSLVDKVSRRQRPDMNMLFLNMKVR
RTHLVSDSLDELTRKRADLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSHCHWFS
SFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPVVPSDQSTPVGICSVTIDDLCQVMPEL
AHGLKELLSYEGNVEEDFYSTFQVFQEEFGVIKSYNLKPGGDKIPVTNQNRREYVQLYTDFLLNKSIYKQ
FAAFYCGFHSVCASNALMLLRPEEVEILVCGSPELDMHALQRSTQYDGYAKTDLTIRYFWDVVLGFPLEL
QKKLLHFTTGSDRVPVGGMADLNFKISKNETSTNWLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEG
FGLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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