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Report for CCDS29522.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29522.2 Public Mus musculus 19 Rcor2 23 108 98 CCDS HistoryNCBI Gene:104383Re-query CCDS DB by CCDS ID:29522.2Re-query CCDS DB by GeneID:104383See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29522.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066646.11 ENSMUSP00000063335.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066646.11Link to Ensembl Protein Viewer:ENSMUSP00000063335.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066646Re-query CCDS DB by Protein ID:ENSMUSP00000063335
Original member Current member NCBI NM_001320554.1 NP_001307483.1 Accepted alive Link to Nucleotide Sequence:NM_001320554.1Link to Protein Sequence:NP_001307483.1Re-query CCDS DB by Nucleotide ID:NM_001320554Re-query CCDS DB by Protein ID:NP_001307483Link to BLAST:NP_001307483.1
Original member Current member NCBI NM_054048.4 NP_473389.2 Accepted alive Link to Nucleotide Sequence:NM_054048.4Link to Protein Sequence:NP_473389.2Re-query CCDS DB by Nucleotide ID:NM_054048Re-query CCDS DB by Protein ID:NP_473389Link to BLAST:NP_473389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307483.1 523 Q8C796 523 100% 0 0
NP_473389.2 523 Q8C796 523 100% 0 0

Chromosomal Locations for CCDS 29522.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7268962 7269088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7269765 7269821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7270101 7270181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7270554 7270606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7270698 7270859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7270970 7271094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7271193 7271262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7271339 7271554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7273100 7273177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7273833 7273890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7274020 7274249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7274343 7274657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGCCCTCAGTAATGGAGAAGCCCAGTGCGGGCTCCGGGATCTTGTCCCGAAGTCGGGCCAAGACGGCAC
CCAACGGCGGACAGCCACACTCGGAGGATGACAGCAGCGAGGAGGAGCACTCTCATGACAGCATGATCCG
AGTTGGAACCAATTACCAAGCAGTAATTCCGGAGTGCAAGCCTGAGAGCCCTGCACGCTATAGCAACAAG
GAGCTGAAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACTTGACAAGTACATTG
CAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAGGCACTCGGCATGCTTCTGTGGCATAAACACGA
TGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG
GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATGCTCCCTGACA
AGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGA
CAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGTGATGAACTAGAAGAGGGACGAGGA
GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAGCCTCTGCCATCCAGACCTCTGAATG
CACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAG
ACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCT
AACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAGGTCCAGAGCATGAAGCAGA
CCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAGGCTAATACCAA
GTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAGCTATTCGTAGATACGGCAAAGAC
TTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATC
GTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCC
GGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAGGTC
CAGATTACATCTGTCTCAACATCAGTACCCCGATCAGTACCCCCTGCACCGCCCCCACCTCCACCGCCCA
CCTCGCTTTCCCAGCCACCCCCGCTGCTGAGGCCACCTCTGCCCACAGCTCCCACATTGCTCCGCCAGCC
GCCTCCCCTGCAGCAGGGCCGCTTCCTGCAGCCTCGGCTGGCCCCCAACCAGCCTCCACCACCGCTCATC
CGCCCTGCCCTGGCTGCCTCTCGCCACAGTGCCCGCCCTGGTCCTCAGCCTCCACCTACCCTGGTTGGAG
CTCCTTTGGAGCCCCCTGCACCCTCACTTTGA

Translation (523 aa):
MPSVMEKPSAGSGILSRSRAKTAPNGGQPHSEDDSSEEEHSHDSMIRVGTNYQAVIPECKPESPARYSNK
ELKGMLVWSPNHCVSDAKLDKYIAMAKEKHGYNIEQALGMLLWHKHDVEKSLADLANFTPFPDEWTVEDK
VLFEQAFGFHGKCFQRIQQMLPDKVIPSLVKYYYSWKKTRSRTSVMDRQARRLGGRKDKEDSDELEEGRG
AVSEGEPDTGDPKREPLPSRPLNARPGPGKKEVQISQYRHHPLRTRRRPPKGMYLSPEGLTAVSGSPDLA
NLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGIDPLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKD
FGAIAEVIGNKTLTQVKTFFVSYRRRFNLEEVLQEWEAEQDGAPAAPVPTEEARRGAPVPATALEEDDEV
QITSVSTSVPRSVPPAPPPPPPPTSLSQPPPLLRPPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLI
RPALAASRHSARPGPQPPPTLVGAPLEPPAPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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