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Report for CCDS29057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29057.1 Public Mus musculus 18 Abhd3 23 108 98 CCDS HistoryNCBI Gene:106861Re-query CCDS DB by CCDS ID:29057.1Re-query CCDS DB by GeneID:106861See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117828.8 ENSMUSP00000113137.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117828.8Link to Ensembl Protein Viewer:ENSMUSP00000113137.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117828Re-query CCDS DB by Protein ID:ENSMUSP00000113137
Original member Current member NCBI NM_134130.1 NP_598891.1 Accepted alive Link to Nucleotide Sequence:NM_134130.1Link to Protein Sequence:NP_598891.1Re-query CCDS DB by Nucleotide ID:NM_134130Re-query CCDS DB by Protein ID:NP_598891Link to BLAST:NP_598891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598891.1 411 Q91ZH7-1 411 100% 0 0

Chromosomal Locations for CCDS 29057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 10645057 10645235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10647726 10647891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10647970 10648018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10652188 10652361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10658780 10658892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10682069 10682114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10704548 10704730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10706001 10706164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10706530 10706691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGCAGCGCCTGGCCATGGACCTGCGGGTGCTGTCCCGGGAGCTGGCGCTCTACCTGGAGCACCAGGTTC
GCGTCGGCTTCTTCGGCTCGGGCGTGGGCTTGTCACTGATCTTGGGATTCAGCGTTGCCTATGCTTGCTA
CTACCTGAGTAGCATTGCCAAGAAACCCCAGTTAGTGATTGGAGGGGAGAGTTTCAGCCGCTTCCTACAG
GACCACTGTCCCGTGGTGACAGAAACCTATTACCCGACGGTCTGGTGCTGGGAGAGCCGAGGACAGACAT
TGCTGAGACCCTTCATCACTTCCAAACCCCCGGTGCAATACAGGAACGAACTCATTAAAACTGCAGACGG
AGGACAGATCTCACTGGACTGGTTTGATAACAATAACAGTGCGTACTATGTGGATGCCAGCACCAGACCT
ACTATCTTGCTCTTGCCTGGCCTCACTGGAACAAGCAAGGAATCCTACATCCTTCATATGATCCATCTCA
GTGAAGAATTAGGATACAGGTGTGTGGTTTTTAATAACAGAGGAGTAGCAGGAGAAAGTCTCTTGACACC
ACGGACTTACTGCTGTGCGAACACTGAAGACTTGGAGGCCGTCGTCCACCACGTGCACAGCCTGTACCCT
GGGGCTCCTTTTCTGGCAGCAGGCGTATCAATGGGAGGAATGCTGCTTCTGAATTACTTGGGTAAAATTG
GGTCCAAAACCCCTCTGATGGCTGCTGCAACGTTTTCGGTTGGCTGGAACACTTTCGCTTGCTCAGAGTC
TCTGGAGAGGCCGCTGAACTGGCTACTTTTTAATTACTACTTAACAACTTGCCTCCAGTCATCAGTTAAG
AAGCACCGGCATATGTTTGTGGAGCAGATTGACATGGATCAGGTCATGAAGGCCAAGTCGATCAGAGAGT
TTGATAAGCGGTTCACGGCGGTCATGTTTGGGTACCGCACACTCGATGATTACTACACCGATGCCAGTCC
AAACCGCAGGCTGAAGTCAGTGGGAATCCCTGTTCTGTGCCTGAATGCTACGGACGACGTGTTCTCACCC
AGCCATGCTATCCCAATAGAAACTGCTAAACAAAACCCTAACGTGGCTTTGGTCCTTACAGCCTATGGAG
GCCATATTGGTTTTCTGGAGGGAATCTGGCCTAGGCAATGCACTTACATGGATCGAGTCTTCAAGCAATT
TGTACAGGCCATGGTTGAGCACGGACATGAACTCTCCAACATGTAG

Translation (411 aa):
MQRLAMDLRVLSRELALYLEHQVRVGFFGSGVGLSLILGFSVAYACYYLSSIAKKPQLVIGGESFSRFLQ
DHCPVVTETYYPTVWCWESRGQTLLRPFITSKPPVQYRNELIKTADGGQISLDWFDNNNSAYYVDASTRP
TILLLPGLTGTSKESYILHMIHLSEELGYRCVVFNNRGVAGESLLTPRTYCCANTEDLEAVVHHVHSLYP
GAPFLAAGVSMGGMLLLNYLGKIGSKTPLMAAATFSVGWNTFACSESLERPLNWLLFNYYLTTCLQSSVK
KHRHMFVEQIDMDQVMKAKSIREFDKRFTAVMFGYRTLDDYYTDASPNRRLKSVGIPVLCLNATDDVFSP
SHAIPIETAKQNPNVALVLTAYGGHIGFLEGIWPRQCTYMDRVFKQFVQAMVEHGHELSNM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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