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Report for CCDS28500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28500.1 Public Mus musculus 17 Nubp2 23 108 98 CCDS HistoryNCBI Gene:26426Re-query CCDS DB by CCDS ID:28500.1Re-query CCDS DB by GeneID:26426See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044252.6 ENSMUSP00000049319.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044252.6Link to Ensembl Protein Viewer:ENSMUSP00000049319.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044252Re-query CCDS DB by Protein ID:ENSMUSP00000049319
Original member Current member NCBI NM_011956.3 NP_036086.1 Accepted alive Link to Nucleotide Sequence:NM_011956.3Link to Protein Sequence:NP_036086.1Re-query CCDS DB by Nucleotide ID:NM_011956Re-query CCDS DB by Protein ID:NP_036086Link to BLAST:NP_036086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036086.1 275 Q9R061 275 100% 0 0

Chromosomal Locations for CCDS 28500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24883169 24883314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24883806 24883875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24884125 24884235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24884401 24884555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24885419 24885617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24885719 24885837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24886279 24886306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGAGGCTGCTGCCGGTGAGCGTGCAGAACCCGGGAACCTGGCCGGGGTGCGACACATCATCCTTGTTC
TTTCTGGAAAGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGGCTCTGCGCCACCAGGG
CAAGAAGGTGGGAATCCTAGATGTGGACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGC
AAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTCCCTTA
TGTCTGTGGGGTTCCTGCTGGAAAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGCACT
GATAAAGCAGTTTGTGTCTGACGTGGCCTGGGGGCAGCTGGATTATCTGGTTGTGGACACACCTCCAGGG
ACCTCTGATGAGCACATGGCCACTATGGAAGCCCTGCGCCCCTACAGGCCCCTTGGGGCTCTTGTAGTCA
CCACACCACAGGCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGACCTTCTGTAAGAAGACTGGGCTGCA
GGTGATAGGGGTCATAGAGAACATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTC
TCCAGCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTGTCCCCCTGGATT
CCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC
CGCACTCACGTCCATAGCCCAGAGAGTTGTGCACAGGATGTCTGCCCTGTGCTCCTGA

Translation (275 aa):
MEAAAGERAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGPSIPHMLRAQG
KAVHQCDNGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQFVSDVAWGQLDYLVVDTPPG
TSDEHMATMEALRPYRPLGALVVTTPQAVSIGDVRRELTFCKKTGLQVIGVIENMSGFTCPHCAECTNVF
SSGSGEELARLAGVPFLGSVPLDSQLTRSLEEGRDFIQEFPKSTAYSALTSIAQRVVHRMSALCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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