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Report for CCDS28224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28224.1 Public Mus musculus 16 Tfg 23 108 98 CCDS HistoryNCBI Gene:21787Re-query CCDS DB by CCDS ID:28224.1Re-query CCDS DB by GeneID:21787See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065515.13 ENSMUSP00000067867.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065515.13Link to Ensembl Protein Viewer:ENSMUSP00000067867.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065515Re-query CCDS DB by Protein ID:ENSMUSP00000067867
Original member Current member NCBI NM_019678.3 NP_062652.1 Accepted alive Link to Nucleotide Sequence:NM_019678.3Link to Protein Sequence:NP_062652.1Re-query CCDS DB by Nucleotide ID:NM_019678Re-query CCDS DB by Protein ID:NP_062652Link to BLAST:NP_062652.1

Chromosomal Locations for CCDS 28224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56690771 56691153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56694400 56694489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56697459 56697596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56701069 56701236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56704427 56704573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56705611 56705694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56712611 56712794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGAACGGACAGTTGGACCTAAGTGGGAAGCTGATTATCAAAGCTCAACTTGGGGAAGATATCCGACGAA
TTCCCATTCATAATGAAGACATTACTTACGATGAATTAGTGCTAATGATGCAGCGAGTATTCAGAGGAAA
GCTTCTGAGTAATGATGAAGTTACAATAAAGTATAAGGATGAAGATGGAGATCTTATAACAATTTTTGAT
AGTTCTGACCTTTCCTTTGCAATTCAGTGTAGTAGAATACTGAAACTGACATTATTTGTTAATGGCCAGC
CAAGACCCCTTGAATCAAGTCAGGTGAAATATCTTCGTCGAGAACTGGTAGAACTTCGAAATAAAGTGAA
TCGCTTATTGGATAGCTTAGAACCACCTGGAGAACCAGGACCTTCCACCAGTATTCCTGAAAATGATACT
GTGGATGGCAGGGAAGAGAAGCCTGCCGCTTCTGACTCTTCTGGGAAACAGTCAACTCAGGTTATGGCAG
CAAGTATGTCAGCTTTTGATCCTCTGAAAAACCAAGATGAAATCAACAAAAACGTCATGTCAGCATTTGG
ATTAACAGATGACCAGGTTTCAGGCCCACCCAGTGCCCCTACAGAAGACCGCTCCGGAACACCTGACAGC
ATTGCTTCTTCCTCCTCAGCAGCACACCCAGCAGTTCAGCCGCAGCAACCTCCCTATGCAGGAGCTCAGA
CACAAGCAGGTCAGATTGAAGGTCAGATGTACCAGCAGTACCAGCAGCAGGCTGGCTACAGTGCCCAGCA
GCCTCAGGCCCCTCCTCAGCAGTATGGTGTTCAGTACTCAGCTAGTTACAGCCAGCAGACTGGACCCCAA
CAACCTCAGCAGTTCCAGGGATATGGCCAACAACCAACTTCCCAGGCACCGGCTCCTGCCTTTTCTGGCC
AGCCACAACAACTGCCTGCTCAACCACCACAGCAGTACCAGGCGAGCACTTACCCTCCACAAACGTATAC
TACCCAACCATCTCAGCCTGCCAACTATACTGTTCCCCCTGGCTCTCAGCCTGGAATGGCTCCAAGCCAA
CCTGGTGCTTACCAACCAAGACCAGGTTTTACGCCATCTCCTGCAAGTACCATGACCCCTCCTTCTAGTG
GGGCTAACCCTTATGCTCGTAACCGTCCTCCTTTTGGTCAGGGGTATGCCCAACCTGGACCTGGTTATCG
ATAA

Translation (397 aa):
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKDEDGDLITIFD
SSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELVELRNKVNRLLDSLEPPGEPGPSTSIPENDT
VDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVSGPPSAPTEDRSGTPDS
IASSSSAAHPAVQPQQPPYAGAQTQAGQIEGQMYQQYQQQAGYSAQQPQAPPQQYGVQYSASYSQQTGPQ
QPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASTYPPQTYTTQPSQPANYTVPPGSQPGMAPSQ
PGAYQPRPGFTPSPASTMTPPSSGANPYARNRPPFGQGYAQPGPGYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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