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Report for CCDS28170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28170.1 Public Mus musculus 16 Poglut1 23 108 98 CCDS HistoryNCBI Gene:224143Re-query CCDS DB by CCDS ID:28170.1Re-query CCDS DB by GeneID:224143See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036210.6 ENSMUSP00000038166.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036210.6Link to Ensembl Protein Viewer:ENSMUSP00000038166.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036210Re-query CCDS DB by Protein ID:ENSMUSP00000038166
Original member Current member NCBI NM_172380.4 NP_759012.1 Accepted alive Link to Nucleotide Sequence:NM_172380.4Link to Protein Sequence:NP_759012.1Re-query CCDS DB by Nucleotide ID:NM_172380Re-query CCDS DB by Protein ID:NP_759012Link to BLAST:NP_759012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_759012.1 392 Q8BYB9 392 100% 0 0

Chromosomal Locations for CCDS 28170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38526625 38526781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38527577 38527633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38529445 38529612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38531784 38531842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38534725 38534824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38537907 38537966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38542838 38542959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38545749 38545884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38548438 38548581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38549343 38549433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38550083 38550167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGAGCGTCGGGCGGGCTCTCGGCTTAGGGCATGGATGCTGTTACTGCTCCTGTGCCCGGTGCAGGGCC
GCCAGAAGGACTCAGGCTCAAAATGGAAAGTATTTCTTGACCAAATTAACAGGGCTTTGGAGAATTATGA
ACCATGTTCAAGTCAAAACTGCAGCTGCTATCACGGCGTCATAGAAGAGGACCTGACTCCTTTCCGAGGT
GGGATCTCCAGGAAGATGATGGCTGAGGTGGTCAGGCGGAAGCTAGGAACCCACTACCAGATCATTAAGA
ACCGGTTATTCAGGGAAGATGACTGCATGTTTCCCTCCAGGTGTAGTGGCGTGGAACACTTTATTTTGGA
AGTCATCCATCGCCTCCCTGACATGGAAATGGTAATCAATGTCCGAGATTATCCTCAGGTTCCTAAATGG
ATGGAGCCTACCATCCCCGTCTTCTCCTTCAGTAAGACATCGGAGTACCATGATATCATGTATCCTGCGT
GGACATTTTGGGAAGGGGGCCCTGCTGTGTGGCCACTTTATCCTACAGGTCTTGGACGGTGGGACCTCTT
CAGAGAAGACCTGTTAAGGTCAGCAGCGCAATGGCCGTGGGAAAAGAAAAATTCTACAGCATATTTCCGA
GGATCAAGGACAAGCCCAGAAAGAGATCCTCTCATTCTCCTATCTCGGAAAAATCCAAAGCTCGTCGATG
CCGAGTACACCAAAAACCAGGCCTGGAAGTCTATGAAAGATACTCTGGGAAAGCCAGCCGCTAAGGATGT
ACACCTCATAGATCACTGCAAATACAGATACCTATTTAATTTTCGAGGTGTAGCTGCAAGCTTCCGGTTC
AAACACCTCTTCTTGTGCGGTTCACTGGTCTTCCATGTTGGTGATGAGTGGGTGGAGTTCTTCTACCCAC
AACTAAAGCCATGGGTTCACTACATCCCAGTCAAGACCGACCTCTCCAATGTCCAGGAGCTGTTGCAGTT
TGTAAAAGCGAATGATGATATCGCTCAGGAAATTGCTAAAAGGGGAAGCCAGTTCATCATAAACCATTTG
CAGATGGATGACATCACCTGTTACTGGGAGAACCTCTTGACTGACTATTCCAAATTCCTGTCCTATAATG
TAACAAGAAGAAAAGATTATTATCAGATCGTTCCCAGACGTTTGAAAACTGAACTGTAG

Translation (392 aa):
MERRAGSRLRAWMLLLLLCPVQGRQKDSGSKWKVFLDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRG
GISRKMMAEVVRRKLGTHYQIIKNRLFREDDCMFPSRCSGVEHFILEVIHRLPDMEMVINVRDYPQVPKW
MEPTIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPLYPTGLGRWDLFREDLLRSAAQWPWEKKNSTAYFR
GSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLIDHCKYRYLFNFRGVAASFRF
KHLFLCGSLVFHVGDEWVEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQEIAKRGSQFIINHL
QMDDITCYWENLLTDYSKFLSYNVTRRKDYYQIVPRRLKTEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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