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Report for CCDS27943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27943.1 Public Mus musculus 16 Grin2a 23 108 98 CCDS HistoryNCBI Gene:14811Re-query CCDS DB by CCDS ID:27943.1Re-query CCDS DB by GeneID:14811See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032331.7 ENSMUSP00000032331.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032331.7Link to Ensembl Protein Viewer:ENSMUSP00000032331.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032331Re-query CCDS DB by Protein ID:ENSMUSP00000032331
Original member Current member EBI ENSMUST00000115835.7 ENSMUSP00000111501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115835.7Link to Ensembl Protein Viewer:ENSMUSP00000111501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115835Re-query CCDS DB by Protein ID:ENSMUSP00000111501
Original member Current member EBI ENSMUST00000199708.4 ENSMUSP00000142900.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199708.4Link to Ensembl Protein Viewer:ENSMUSP00000142900.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199708Re-query CCDS DB by Protein ID:ENSMUSP00000142900
Original member Current member NCBI NM_008170.4 NP_032196.2 Accepted alive Link to Nucleotide Sequence:NM_008170.4Link to Protein Sequence:NP_032196.2Re-query CCDS DB by Nucleotide ID:NM_008170Re-query CCDS DB by Protein ID:NP_032196Link to BLAST:NP_032196.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032196.2 1464 P35436 1464 100% 0 0

Chromosomal Locations for CCDS 27943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 9577827 9579626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9585026 9585264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9612570 9612757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9644099 9644259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9653396 9653625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9657674 9657799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9663181 9663334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9663439 9663607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9669705 9669910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9707604 9707718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9761391 9761983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 9992120 9992533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4395 nt):
ATGGGCAGACTGGGCTACTGGACCTTGCTGGTATTGCCGGCCCTTCTGGTCTGGCACGGTCCGGCGCAGA
ACGCGGCGGCGGAGAAGGGTACTCCAGCGCTGAACATTGCGGTGCTGCTGGGTCACAGCCACGACGTGAC
AGAACGCGAACTTCGAAATCTGTGGGGCCCGGAGCAGGCAACCGGCTTGCCCCTGGATGTGAACGTGGTG
GCGTTATTGATGAACCGCACTGACCCTAAGAGCCTCATCACGCATGTGTGCGACCTCATGTCCGGGGCGC
GCATCCATGGCTTGGTGTTTGGAGATGATACGGACCAAGAGGCTGTGGCTCAGATGCTGGATTTTATCTC
CTCACAGACTTTCATCCCCATCTTGGGCATTCATGGGGGTGCATCTATGATCATGGCTGACAAGGATCCG
ACATCCACGTTCTTCCAGTTTGGAGCTTCCATCCAGCAGCAAGCCACGGTCATGCTGAAGATCATGCAGG
ACTATGACTGGCATGTCTTCTCCTTGGTCACCACCATCTTCCCTGGCTACAGAGACTTCATCAGCTTCAT
CAAGACAACAGTGGACAACAGCTTTGTGGGCTGGGATATGCAGAACGTGATCACACTGGACACCTCTTTT
GAGGACGCCAAGACACAGGTCCAGCTGAAGAAGATCCACTCCTCTGTCATCCTGCTCTACTGCTCCAAGG
ATGAGGCTGTCCTCATCCTGAGCGAGGCTCGCTCTCTTGGCCTCACCGGCTACGATTTCTTCTGGATTGT
CCCCAGTTTGGTCTCCGGGAACACAGAGCTCATCCCCAAAGAGTTTCCATCGGGTCTCATTTCAGTCTCT
TACGACGACTGGGACTACAGTCTGGAGGCAAGAGTGAGAGACGGTCTTGGGATCTTAACCACTGCCGCAT
CTTCCATGTTGGAGAAATTCTCCTACATTCCCGAGGCCAAGGCCAGCTGCTACGGGCAGACAGAGAAGCC
GGAGACCCCGCTACACACTCTGCACCAATTTATGGTCAATGTGACTTGGGATGGCAAGGACTTGTCCTTC
ACTGAGGAAGGCTATCAGGTGCACCCCAGGCTTGTGGTGATCGTGCTGAATAAGGACCGGGAATGGGAAA
AGGTGGGCAAGTGGGAGAATCAGACTCTGAGCCTGCGGCATGCTGTGTGGCCAAGGTATAAGTCCTTTTC
TGACTGTGAGCCAGATGACAACCACCTCAGCATTGTCACCTTGGAGGAAGCCCCCTTCGTCATCGTAGAA
GACATAGACCCACTGACTGAGACCTGCGTCAGGAACACGGTACCCTGTCGGAAGTTTGTCAAGATCAACA
ATTCAACCAACGAAGGGATGAATGTGAAGAAGTGCTGCAAGGGGTTCTGCATCGACATCCTTAAGAAACT
GTCCAGAACTGTAAAGTTCACCTATGACCTCTACCTGGTGACCAATGGGAAGCATGGGAAAAAGGTTAAC
AATGTGTGGAATGGAATGATAGGCGAAGTGGTCTATCAACGAGCAGTTATGGCCGTGGGCTCCCTCACCA
TCAATGAGGAGCGTTCAGAAGTGGTGGACTTCTCCGTGCCCTTTGTGGAGACAGGAATCAGTGTCATGGT
CTCCAGGAGTAATGGCACTGTTTCCCCTTCTGCTTTCCTTGAACCCTTCAGCGCCTCTGTCTGGGTGATG
ATGTTCGTGATGCTGCTCATTGTCTCTGCCATTGCTGTCTTCGTTTTTGAATACTTCAGTCCTGTTGGAT
ACAACAGAAACTTAGCCAAAGGGAAAGCTCCCCATGGGCCTTCTTTTACCATTGGAAAAGCTATATGGCT
CCTCTGGGGCCTGGTCTTCAACAATTCTGTGCCCGTCCAGAATCCTAAAGGCACAACCAGCAAGATAATG
GTATCAGTGTGGGCCTTCTTTGCCGTCATCTTCCTTGCAAGTTACACAGCCAACCTGGCTGCCTTCATGA
TCCAGGAGGAGTTTGTGGACCAAGTGACTGGCCTCAGTGACAAGAAGTTCCAGAGACCTCATGACTATTC
TCCGCCTTTCCGATTTGGGACAGTACCCAATGGAAGTACAGAAAGGAATATTCGTAACAACTACCCCTAT
ATGCACCAGTACATGACCAAATTCAACCAGAGGGGCGTAGAGGATGCCTTGGTCAGCTTGAAAACTGGGA
AGTTGGACGCTTTCATCTATGACGCAGCTGTCTTGAACTACAAGGCCGGGAGGGATGAAGGCTGTAAACT
GGTGACCATTGGGAGCGGGTACATCTTTGCCACCACAGGCTATGGAATTGCTCTGCAGAAGGGCTCACCC
TGGAAGAGGCAGATTGACCTCGCTCTGCTCCAGTTTGTTGGTGACGGTGAGATGGAAGAGCTGGAGACAC
TGTGGCTTACGGGCATCTGCCACAACGAGAAGAATGAGGTGATGAGCAGCCAGCTGGACATCGACAACAT
GGCAGGAGTTTTCTACATGCTGGCTGCAGCTATGGCCCTCAGCCTCATCACCTTCATCTGGGAGCACCTC
TTCTACTGGAAGCTGCGCTTCTGCTTCACAGGCGTGTGTTCTGACCGGCCCGGGCTGCTCTTCTCCATCA
GCAGGGGCATCTACAGTTGCATCCATGGAGTGCACATTGAAGAAAAGAAGAAGTCTCCAGACTTCAATCT
GACTGGGTCACAGAGCAACATGCTAAAGCTTCTCCGCTCAGCTAAAAACATCTCCAACATGTCCAACATG
AACTCCTCGCGAATGGACTCACCCAAAAGAGCTGCTGACTTCATCCAAAGAGGCTCACTTATTGTGGACA
TGGTTTCAGACAAGGGAAATTTGATATACTCAGATAACAGGTCCTTTCAAGGGAAGGACAGTATATTTGG
AGAAAACATGAATGAACTGCAAACATTTGTGGCCAACAGGCACAAGGATAGTCTCAGTAACTATGTGTTT
CAGGGACAGCATCCTCTCACTCTCAATGAGTCCAACCCCAACACAGTGGAGGTGGCTGTCAGCACTGAAT
CCAAAGGGAACTCCCGACCCCGGCAGCTTTGGAAGAAATCCATGGAGTCTCTACGCCAGGATTCTCTAAA
CCAGAACCCAGTCTCCCAGAGGGATGAGAAGACTGCAGAGAATAGGACCCACTCCCTAAAGAGTCCTAGG
TATCTTCCAGAAGAGGTAGCCCATTCTGACATTTCTGAAACCTCAAGCCGGGCCACATGCCACAGGGAGC
CAGATAATAATAAGAACCACAAGACCAAGGATAACTTCAAAAGGTCAATGGCCTCTAAATACCCCAAGGA
CTGTAGTGAGGTTGAACGTACCTACGTGAAAACCAAAGCAAGTTCTCCCAGGGATAAGATCTACACCATC
GATGGTGAGAAGGAGCCCAGCTTCCACTTAGATCCTCCACAGTTCATTGAAAACATAGTCTTGCCTGAGA
ATGTGGACTTCCCAGATACCTACCAAGATCACAATGAGAATTTCCGCAAGGGGGACTCCACACTGCCCAT
GAACAGGAACCCACTACACAATGAAGATGGGCTTCCCAACAATGACCAGTATAAACTCTATGCCAAGCAC
TTTACCTTGAAAGACAAGGGTTCCCCACATAGTGAGGGCAGTGATCGATATCGGCAGAACTCCACGCATT
GCAGAAGCTGCCTCTCAAACCTGCCCACCTACTCAGGCCACTTTACCATGAGATCTCCTTTCAAGTGTGA
TGCCTGTCTGCGGATGGGGAACCTCTATGACATTGATGAAGACCAGATGCTTCAGGAGACAGGCAACCCA
GCTACTCGTGAGGAGGCCTACCAGCAGGACTGGTCACAGAACAACGCCCTCCAGTTCCAGAAGAACAAGC
TAAAGATTAATCGACAGCACTCCTATGATAACATTCTCGACAAACCCAGGGAGATAGACCTTAGCAGGCC
CTCTCGTAGCATAAGCCTCAAGGACAGGGAAAGGCTACTGGAGGGCAACTTATACGGGAGCCTGTTCAGT
GTCCCCTCAAGCAAACTCTTGGGGAACAAAAGCTCCCTTTTCCCCCAAGGTCTGGAGGACAGCAAGAGGA
GCAAATCTCTCTTGCCAGACCATACCTCTGATAATCCTTTCCTCCACACGTACGGGGATGACCAACGCTT
AGTTATTGGGAGATGTCCCTCGGACCCTTACAAACACTCATTGCCATCACAGGCAGTAAATGACAGCTAT
CTTCGGTCATCCTTGAGGTCAACAGCATCATATTGCTCCAGGGACAGTCGGGGCCACAGTGATGTGTATA
TTTCAGAGCATGTTATGCCTTATGCTGCAAATAAGAATAACATGTACTCTACCCCCAGGGTTTTAAATTC
CTGCAGCAATAGACGTGTGTACAAGAAAATGCCTAGTATTGAATCTGATGTCTAA

Translation (1464 aa):
MGRLGYWTLLVLPALLVWHGPAQNAAAEKGTPALNIAVLLGHSHDVTERELRNLWGPEQATGLPLDVNVV
ALLMNRTDPKSLITHVCDLMSGARIHGLVFGDDTDQEAVAQMLDFISSQTFIPILGIHGGASMIMADKDP
TSTFFQFGASIQQQATVMLKIMQDYDWHVFSLVTTIFPGYRDFISFIKTTVDNSFVGWDMQNVITLDTSF
EDAKTQVQLKKIHSSVILLYCSKDEAVLILSEARSLGLTGYDFFWIVPSLVSGNTELIPKEFPSGLISVS
YDDWDYSLEARVRDGLGILTTAASSMLEKFSYIPEAKASCYGQTEKPETPLHTLHQFMVNVTWDGKDLSF
TEEGYQVHPRLVVIVLNKDREWEKVGKWENQTLSLRHAVWPRYKSFSDCEPDDNHLSIVTLEEAPFVIVE
DIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVN
NVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVM
MFVMLLIVSAIAVFVFEYFSPVGYNRNLAKGKAPHGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIM
VSVWAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPY
MHQYMTKFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP
WKRQIDLALLQFVGDGEMEELETLWLTGICHNEKNEVMSSQLDIDNMAGVFYMLAAAMALSLITFIWEHL
FYWKLRFCFTGVCSDRPGLLFSISRGIYSCIHGVHIEEKKKSPDFNLTGSQSNMLKLLRSAKNISNMSNM
NSSRMDSPKRAADFIQRGSLIVDMVSDKGNLIYSDNRSFQGKDSIFGENMNELQTFVANRHKDSLSNYVF
QGQHPLTLNESNPNTVEVAVSTESKGNSRPRQLWKKSMESLRQDSLNQNPVSQRDEKTAENRTHSLKSPR
YLPEEVAHSDISETSSRATCHREPDNNKNHKTKDNFKRSMASKYPKDCSEVERTYVKTKASSPRDKIYTI
DGEKEPSFHLDPPQFIENIVLPENVDFPDTYQDHNENFRKGDSTLPMNRNPLHNEDGLPNNDQYKLYAKH
FTLKDKGSPHSEGSDRYRQNSTHCRSCLSNLPTYSGHFTMRSPFKCDACLRMGNLYDIDEDQMLQETGNP
ATREEAYQQDWSQNNALQFQKNKLKINRQHSYDNILDKPREIDLSRPSRSISLKDRERLLEGNLYGSLFS
VPSSKLLGNKSSLFPQGLEDSKRSKSLLPDHTSDNPFLHTYGDDQRLVIGRCPSDPYKHSLPSQAVNDSY
LRSSLRSTASYCSRDSRGHSDVYISEHVMPYAANKNNMYSTPRVLNSCSNRRVYKKMPSIESDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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