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Report for CCDS27780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27780.1 Public Mus musculus 15 Amigo2 23 108 98 CCDS HistoryNCBI Gene:105827Re-query CCDS DB by CCDS ID:27780.1Re-query CCDS DB by GeneID:105827See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053106.6 ENSMUSP00000059913.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053106.6Link to Ensembl Protein Viewer:ENSMUSP00000059913.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053106Re-query CCDS DB by Protein ID:ENSMUSP00000059913
Original member Current member EBI ENSMUST00000229890.1 ENSMUSP00000155019.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229890.1Link to Ensembl Protein Viewer:ENSMUSP00000155019.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229890Re-query CCDS DB by Protein ID:ENSMUSP00000155019
Original member Current member NCBI NM_001164563.1 NP_001158035.1 Accepted alive Link to Nucleotide Sequence:NM_001164563.1Link to Protein Sequence:NP_001158035.1Re-query CCDS DB by Nucleotide ID:NM_001164563Re-query CCDS DB by Protein ID:NP_001158035Link to BLAST:NP_001158035.1
Original member Current member NCBI NM_001164602.1 NP_001158074.1 Accepted alive Link to Nucleotide Sequence:NM_001164602.1Link to Protein Sequence:NP_001158074.1Re-query CCDS DB by Nucleotide ID:NM_001164602Re-query CCDS DB by Protein ID:NP_001158074Link to BLAST:NP_001158074.1
Original member Current member NCBI NM_178114.4 NP_835215.1 Accepted alive Link to Nucleotide Sequence:NM_178114.4Link to Protein Sequence:NP_835215.1Re-query CCDS DB by Nucleotide ID:NM_178114Re-query CCDS DB by Protein ID:NP_835215Link to BLAST:NP_835215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158035.1 519 Q80ZD9 519 100% 0 0
NP_001158074.1 519 Q80ZD9 519 100% 0 0
NP_835215.1 519 Q80ZD9 519 100% 0 0

Chromosomal Locations for CCDS 27780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 97244980 97246539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGTCGTTAAGGTTCCACACACTGCCCACCCTGCCTAGAGCTGTCAAACCGGGTTGCAGAGAGCTGCTGT
GTCTGTTGGTGATCGCAGTGATGGTGAGCCCCAGCGCCTCAGGAATGTGCCCCACTGCTTGCATCTGTGC
CACCGACATTGTCAGCTGCACCAACAAAAACCTATCTAAGGTGCCCGGGAACCTTTTCAGACTGATTAAA
AGACTGGATCTGAGCTATAACAGAATCGGACTGTTGGATGCCGACTGGATCCCGGTGTCGTTTGTCAAGC
TGAGCACCTTAATTCTTCGCCACAACAACATCACCAGCATCTCCACGGGCAGTTTCTCCACAACCCCAAA
TTTAAAGTGTCTGGACTTATCATCCAATAGGCTGAAGTCGGTAAAGAGTGCCACATTCCAAGAGCTGAAG
GCTCTGGAAGTACTGCTGCTGTACAACAACCACATTTCCTATCTGGACCCCGCAGCGTTCGGGGGGCTTT
CCCACTTGCAGAAACTCTATCTGAGTGGGAACTTTCTCACACAGTTCCCTATGGATTTGTATACTGGGAG
GTTCAAGCTGGCTGATCTGACATTTTTAGATGTTTCCTATAATCGAATCCCTTCCATACCGATGCACCAT
ATAAACTTAGTGCCGGGGAGACAGCTGAGAGGCATCTACCTTCACGGGAACCCATTTGTATGTGACTGTT
CTCTGTACTCGTTGCTGATCTTTTGGTACCGTAGGCACTTTAGCTCCGTGATGGATTTTAAGAATGACTA
TACCTGTCGCCTGTGGTCTGACTCCAGGCACTCCCACCAGCTGCAGCTGCTCCAGGAGAGCTTTCTGAAC
TGTTCTTACAGCGTTATCAACGGCTCCTTCCACGCACTTGGCTTTATCCACGAGGCTCAGGTTGGGGAGA
GGGCGATCGTCCACTGTGACAGCAAGACTGGCAATGGAAATACTGATTTCATCTGGGTCGGTCCCGATAA
CAGGCTGCTGGAGCCAGATAAAGACATGGGGAACTTTCGTGTGTTTTACAACGGAAGTCTGGTCATAGAG
AACCCTGGCTTTGAGGACGCCGGGGTATATTCTTGTATCGCAATGAACAGGCAGCGGCTGTTAAACGAGA
CGGTGGATATCATGATCAACGTGAGCAATTTCACCATAAACAGATCCCACGCCCACGAGGCGTTTAACAC
GGCCTTTACCACCCTGGCTGCCTGCGTGGCCAGTATAGTTCTAGTGCTACTGTATCTGTACCTGACGCCG
TGCCCATGCAAATGCAAAGCCAAGAGACAGAAAAACACGCTGAGCCAAAGCAGTGCCCACTCGTCCATTC
TCAGTCCTGGCCCCACTGGCGATGCCTCTGCTGACGATCGGAAGGCAGGTAAAAGAGTCGTGTTTCTGGA
GCCCCTGAAGGACACGGCGGCCGGACAGAATGGCAAAGTCAAGCTTTTCCCCAGTGAGACCGTTATAGCC
GAGGGCATCTTAAAGTCCACCAGGGCAAAGTCTGACTCAGACTCAGTCAATTCCGTGTTCTCAGACACAC
CCTTTGTGGCATCCACTTAG

Translation (519 aa):
MSLRFHTLPTLPRAVKPGCRELLCLLVIAVMVSPSASGMCPTACICATDIVSCTNKNLSKVPGNLFRLIK
RLDLSYNRIGLLDADWIPVSFVKLSTLILRHNNITSISTGSFSTTPNLKCLDLSSNRLKSVKSATFQELK
ALEVLLLYNNHISYLDPAAFGGLSHLQKLYLSGNFLTQFPMDLYTGRFKLADLTFLDVSYNRIPSIPMHH
INLVPGRQLRGIYLHGNPFVCDCSLYSLLIFWYRRHFSSVMDFKNDYTCRLWSDSRHSHQLQLLQESFLN
CSYSVINGSFHALGFIHEAQVGERAIVHCDSKTGNGNTDFIWVGPDNRLLEPDKDMGNFRVFYNGSLVIE
NPGFEDAGVYSCIAMNRQRLLNETVDIMINVSNFTINRSHAHEAFNTAFTTLAACVASIVLVLLYLYLTP
CPCKCKAKRQKNTLSQSSAHSSILSPGPTGDASADDRKAGKRVVFLEPLKDTAAGQNGKVKLFPSETVIA
EGILKSTRAKSDSDSVNSVFSDTPFVAST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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