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Report for CCDS25477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25477.1 Public Mus musculus 11 Rdm1 23 108 98 CCDS HistoryNCBI Gene:66599Re-query CCDS DB by CCDS ID:25477.1Re-query CCDS DB by GeneID:66599See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010506.9 ENSMUSP00000010506.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010506.9Link to Ensembl Protein Viewer:ENSMUSP00000010506.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000010506Re-query CCDS DB by Protein ID:ENSMUSP00000010506
Original member NCBI NM_025654.2 NP_079930.1 Updated not alive Link to Nucleotide Sequence:NM_025654.2Link to Protein Sequence:NP_079930.1Re-query CCDS DB by Nucleotide ID:NM_025654Re-query CCDS DB by Protein ID:NP_079930
Current member NCBI NM_025654.3 NP_079930.1 Accepted alive Link to Nucleotide Sequence:NM_025654.3Link to Protein Sequence:NP_079930.1Re-query CCDS DB by Nucleotide ID:NM_025654Re-query CCDS DB by Protein ID:NP_079930Link to BLAST:NP_079930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079930.1 281 Q9CQK3 281 100% 0 0

Chromosomal Locations for CCDS 25477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101627969 101628064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101628273 101628452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101630238 101630360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101630820 101630979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101633802 101633900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101634788 101634873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101635748 101635849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCGGAGTTGATCTCTTTCGTAGTTCCCACCCAGAGCGACAAAGTTTTGTTGGTGTGGGATCTGAGCA
CTGGGCCCCCAGCCGAAGCCTTAAGTCATTCTCTGTTCACAGTGTTCTCTCAGTTTGGCCTTCTGTATTC
AGTCCGAGTCTTCCCGAACGCTGCAGTGGCTCGTCCTGGTTTCTACGCCATCATCAAGTTTTACTCCTCG
CGGGACGCACAGAGAGCCCAGAAGGCTTGCGATGGGAAACCCCTTTTTCAGACATCACCAGTGAAGGTTC
GTCTTGGAACCAGACACAAGGCACTGCAGCATCAGGCCTTTGCTCTAAACAGCTCACGATGCCAGGAACT
GGCCAATTACTACTTTGGCTTCAGTGGATGGTCGAAAAGGATCATCAAGCTGCAGGAGCTCTCCGGACTG
GAGGATGCAGCTCTCGCTGTGCCCATGCAGAAGGGGAGCCCCCAGTTCCTCTGCGCTGTAGAGGTGGTGC
TGCCCCCCTACGGATGCAGGAGCCCTGGGGTTGGCATCTCTGAGGAGCCTCTGCGCCAGCTGGAGGAAGG
GCAGTCCTCGTTTCTTATGAAGAGGAAGACAGCTCAGAAGCTTGCCTTCCAGGCGGCTGTATCAGATGCC
TTCCAGAAGCTGACCATCGTGGTTCTGGAAAGTGGCAGGATCGCGGTGGAGTACAGGCCCACGGCGGAGG
ATCTAGATGCCAGAAGTGAAGAAGAGCTGCAGAATTTAATCCAGGTCAGCTGCTCCTCTTGGAGTCAGTC
CAGCCAAAGGGAGGAAGAATGTCTCTCGGATTTCAGCCTGGAGGAGGAAGACCTGAAGCTGTGTGATCCG
CACTAG

Translation (281 aa):
MAELISFVVPTQSDKVLLVWDLSTGPPAEALSHSLFTVFSQFGLLYSVRVFPNAAVARPGFYAIIKFYSS
RDAQRAQKACDGKPLFQTSPVKVRLGTRHKALQHQAFALNSSRCQELANYYFGFSGWSKRIIKLQELSGL
EDAALAVPMQKGSPQFLCAVEVVLPPYGCRSPGVGISEEPLRQLEEGQSSFLMKRKTAQKLAFQAAVSDA
FQKLTIVVLESGRIAVEYRPTAEDLDARSEEELQNLIQVSCSSWSQSSQREEECLSDFSLEEEDLKLCDP
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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