NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24808.1 Public Mus musculus 11 Aldh3a1 23 108 98 CCDS HistoryNCBI Gene:11670Re-query CCDS DB by CCDS ID:24808.1Re-query CCDS DB by GeneID:11670See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019246.3 ENSMUSP00000019246.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019246.3Link to Ensembl Protein Viewer:ENSMUSP00000019246.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000019246Re-query CCDS DB by Protein ID:ENSMUSP00000019246
Original member Current member EBI ENSMUST00000108716.7 ENSMUSP00000104356.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108716.7Link to Ensembl Protein Viewer:ENSMUSP00000104356.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108716Re-query CCDS DB by Protein ID:ENSMUSP00000104356
Original member Current member NCBI NM_001112725.1 NP_001106196.1 Accepted alive Link to Nucleotide Sequence:NM_001112725.1Link to Protein Sequence:NP_001106196.1Re-query CCDS DB by Nucleotide ID:NM_001112725Re-query CCDS DB by Protein ID:NP_001106196Link to BLAST:NP_001106196.1
Original member Current member NCBI NM_007436.2 NP_031462.2 Accepted alive Link to Nucleotide Sequence:NM_007436.2Link to Protein Sequence:NP_031462.2Re-query CCDS DB by Nucleotide ID:NM_007436Re-query CCDS DB by Protein ID:NP_031462Link to BLAST:NP_031462.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106196.1 453 P47739 453 100% 0 0
NP_031462.2 453 P47739 453 100% 0 0

Chromosomal Locations for CCDS 24808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61212232 61212393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61213451 61213682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61214185 61214270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61214550 61214758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61215490 61215607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61216279 61216420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61217081 61217247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61217663 61217762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61217991 61218121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61218214 61218228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGAGCAATATCAGTAGCATCGTGAACCGGGCCCGTGATGCCTTTAACTCAGGCAAGACTCGACCGCTGC
AGTTCCGGGTTGAGCAGCTGGAGGCGTTGCAGCGCATGATCAACGAGAACTTGAAAGGCATCTCCAAGGC
GCTGGCCTCTAACCTGCGCAAGAATGAATGGACCTCCTACTACGAGGAGGTGGCTCACGTGCTGGACGAA
ATCGATTTCACGATTAAGGGGCTCTCCGATTGGGCTGAGGACGAGCCTGTGGCAAAGACTCGTCAGACCC
AGGAAGATGACCTCTACATCCACTCGGAGCCCCTGGGCGTGGTCCTTGTCATAGGTGCTTGGAACTACCC
ATTCAACCTCACCATTCAGCCCATGGTGGGTGCCATCGCTGCAGGAAATGCTGTGGTCCTCAAGCCCTCG
GAAGTGAGTGATCACATGGCAGACCTGCTTTCAACACTTATCCCTCAGTATATGGACAAGGATCTGTACC
CAGTGATCAAAGGGGGTGTCCCTGAAACCACGGAGCTGCTCAAAGAGAAGTTTGACCACATCATGTACAC
AGGGAGCACGGCTGTAGGAAAGATCGTCATGGCGGCTGCCGCCAAGCATCTGACCCCTGTCACCTTGGAG
CTTGGAGGAAAGAGCCCTTGTTACGTAGACAAGGACTGTGATCTAGATGTGGCTTGCCGGCGTATTGCTT
GGGGAAAGTTTATGAACAGTGGCCAGACCTGTGTGGCCCCAGACTACATCCTCTGTGACCCCTCCATTCA
GAATGAAATTGTGGAGAAGCTCAAAAAGTCACTGAAAGATTTCTATGGGGAAGATGCTAAGCAGTCCCAT
GACTATGGGAGGATCATCAACGACCGGCACTTCCAGCGGGTCATAAATCTGATTGACAGCAAGAAAGTAG
CCCATGGAGGCACCTGGGATCAGCCTTCACGATACATAGCTCCCACCATCCTAGTGGATGTGGACCCCCA
GTCCCCGGTGATGCAGGAGGAGATCTTTGGGCCGGTGATGCCCATTGTGTGTGTTCGAAGCTTGGATGAG
GCCATTAAATTTATCAACCAGCGCGAGAAGCCCCTGGCACTCTATGTGTTCTCCAACAATGACAAGGTGA
TCAAGAAAATGATCGCAGAGACATCAAGCGGTGGAGTGACAGCCAATGACGTCATTGTTCACATCACTGT
GCCCACTTTGCCCTTTGGGGGTGTGGGGAACAGCGGCATGGGGGCCTACCATGGCAAGAAAAGCTTCGAG
ACCTTTTCCCACCGCCGCTCTTGCCTGGTGAGGTCTCTGCGGAATGAAGAAGCTAACAAGGCCAGGTATC
CCCCAAGCCCAGCCAAGATGCCCCGGCATTGA

Translation (453 aa):
MSNISSIVNRARDAFNSGKTRPLQFRVEQLEALQRMINENLKGISKALASNLRKNEWTSYYEEVAHVLDE
IDFTIKGLSDWAEDEPVAKTRQTQEDDLYIHSEPLGVVLVIGAWNYPFNLTIQPMVGAIAAGNAVVLKPS
EVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKEKFDHIMYTGSTAVGKIVMAAAAKHLTPVTLE
LGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSH
DYGRIINDRHFQRVINLIDSKKVAHGGTWDQPSRYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDE
AIKFINQREKPLALYVFSNNDKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSFE
TFSHRRSCLVRSLRNEEANKARYPPSPAKMPRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH