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Report for CCDS24704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24704.1 Public Mus musculus 11 Tnip1 23 108 98 CCDS HistoryNCBI Gene:57783Re-query CCDS DB by CCDS ID:24704.1Re-query CCDS DB by GeneID:57783See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018482.12 ENSMUSP00000018482.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018482.12Link to Ensembl Protein Viewer:ENSMUSP00000018482.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018482Re-query CCDS DB by Protein ID:ENSMUSP00000018482
Original member Current member EBI ENSMUST00000102731.7 ENSMUSP00000099792.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102731.7Link to Ensembl Protein Viewer:ENSMUSP00000099792.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102731Re-query CCDS DB by Protein ID:ENSMUSP00000099792
Original member Current member EBI ENSMUST00000108889.9 ENSMUSP00000104517.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108889.9Link to Ensembl Protein Viewer:ENSMUSP00000104517.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108889Re-query CCDS DB by Protein ID:ENSMUSP00000104517
Original member Current member NCBI NM_001199275.2 NP_001186204.1 Accepted alive Link to Nucleotide Sequence:NM_001199275.2Link to Protein Sequence:NP_001186204.1Re-query CCDS DB by Nucleotide ID:NM_001199275Re-query CCDS DB by Protein ID:NP_001186204Link to BLAST:NP_001186204.1
Original member Current member NCBI NM_021327.4 NP_067302.2 Accepted alive Link to Nucleotide Sequence:NM_021327.4Link to Protein Sequence:NP_067302.2Re-query CCDS DB by Nucleotide ID:NM_021327Re-query CCDS DB by Protein ID:NP_067302Link to BLAST:NP_067302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186204.1 647 Q9WUU8-1 647 99.8454% 0 1
NP_067302.2 647 Q9WUU8-1 647 99.8454% 0 1

Chromosomal Locations for CCDS 24704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54911537 54911571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54915497 54915587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54916796 54916987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54917256 54917321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54917800 54917925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54918606 54918737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54920761 54920889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54924098 54924229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54924376 54924441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54926704 54926793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54929095 54929218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54930765 54930859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54933989 54934180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54936461 54936541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54937947 54938065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54939598 54939735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54940711 54940846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGGAAGGGAGAGGACCCTACGGGATCTACGACCCAGGGGGCAGCACGCCTCTGGGAGAGGTGTCCGCAG
CTTTTGAACGTCTAGTGGAGGAGAATACTCGGCTGAAGGGAAAAATGCAAGGGATAAAGATGTTAGGGGA
GCTTCTGGAGGAGTCTCAGATGGAAGCGTCCAGACTCCGGCAGAAGGCAGAGGAGCTGGTCAAGGACAGC
GAGCTGTCACCACCGACATCTGCCCCCTCCTTGGTCTCCTTTGATGACCTGGCTGAGCTCACAGGACAGG
ATACAAAGGTCCAGGTACATCCTGCTACCAGCACTGCCGCCACCACCACCGCCACCGCCACCACGGGAAA
CTCCATGGAGAAGCCCGAGCCAGCCTCCAAATCTCCGTCCAATGGCGCCTCCTCGGACTTTGAAGTGGTC
CCTACTGAGGAGCAGAATTCACCCGAAACTGGCAGCCACCCTACGAACATGATGGACCTGGGGCCCCCAC
CCCCAGAGGACAGCAACCTGAAGCTCCACCTGCAGCGCCTGGAGACCACCCTTAGCGTGTGTGCAGAGGA
GCCAGACCACAGCCAGCTCTTCACCCACCTGGGCCGCATGGCCCTCGAGTTCAACAGGTTGGCCTCCAAA
GTGCATAAAAATGAGCAGCGCACCTCCATCCTGCAGACCTTATGTGAGCAGCTGCGCCAGGAGAATGAAG
CCCTGAAGGCCAAGCTGGACAAGGGCCTGGAACAGCGGGATCTGGCTGCTGAGAGGCTGCGGGAGGAAAA
CACGGAGCTCAAGAAACTGTTGATGAACAGCAGCTGCAAAGAGGGACTCTGTGGGCAGCCCAGCTCCCCA
AAGCCAGAGGGTGCTGGCAAGAAGGGCGTGGCTGGACAGCAGCAGGCCAGTGTGATGGCGAGTAAAGTCC
CTGAAGCGGGGGCCTTTGGAGCAGCTGAGAAGAAGGTGAAGTTGCTAGAACAGCAACGCATGGAGCTGCT
GGAAGTGAACAAGCAGTGGGACCAGCATTTCCGGTCCATGAAGCAGCAGTATGAGCAGAAGATCACAGAG
CTTCGCCAGAAGCTGGTGGACCTGCAGAAACAGGTAACTGAGCTGGAGGCCGAACGGGAGCAGAAGCAGC
GTGACTTTGACCGGAAACTCCTCCTGGCCAAATCGAAGATAGAGATGGAAGAGACCGACAAGGAGCAGCT
GACAGCAGAGGCCAAGGAACTGCGCCAGAAGGTCAGGTACCTACAGGATCAGCTGAGCCCGCTCACAAGG
CAACGAGAATACCAGGAGAAGGAGATCCAGCGGCTCAATAAGGCCCTGGAGGAGGCCCTCAGCATCCAGG
CCTCTCCATCATCTCCGCCTGCAGCTTTTGGGAGTCCAGAAGGCGTTGGGGGCCATCTGAGGAAGCAGGA
ACTAGTGACACAGAATGAGTTGCTGAAACAGCAGGTAAAGATCTTTGAAGAGGACTTCCAGAGGGAACGG
AGTGACCGTGAACGCATGAATGAAGAGAAGGAGGAGCTGAAGAAGCAAGTAGAGAAGCTGCAGGCCCAGG
TCACCCTGACTAATGCCCAGCTCAAAACTCTCAAAGAGGAGGAGAAGGCCAAGGAAGCCCTCAAACAGCA
GAAGAGGAAAGCAAAGGCTTCGGGAGAGCGCTACCACATGGAACCCCACCCTGAGCACGTCTGCGGCGCC
TATCCCTATGCCTACCCACCCATGCCAGCCATGGTACCTCACCATGCCTACAAGGACTGGTCCCAGATCC
GATACCCTCCACCCCCTGTGCCCATGGAGCACCCGCCCCCACACCCCAACTCTCGCCTCTTCCATCTGCC
GGAGTACACCTGGCGTCCACCCTGTGCAGGGATTCGGAATCAGAGCTCTCAAGTGATGGACCCGCCCCCA
GACAGGCCTGCAGAGCCAGAGTCTGCAGACAATGACTGTGATGGGCCCCAGTGA

Translation (647 aa):
MEGRGPYGIYDPGGSTPLGEVSAAFERLVEENTRLKGKMQGIKMLGELLEESQMEASRLRQKAEELVKDS
ELSPPTSAPSLVSFDDLAELTGQDTKVQVHPATSTAATTTATATTGNSMEKPEPASKSPSNGASSDFEVV
PTEEQNSPETGSHPTNMMDLGPPPPEDSNLKLHLQRLETTLSVCAEEPDHSQLFTHLGRMALEFNRLASK
VHKNEQRTSILQTLCEQLRQENEALKAKLDKGLEQRDLAAERLREENTELKKLLMNSSCKEGLCGQPSSP
KPEGAGKKGVAGQQQASVMASKVPEAGAFGAAEKKVKLLEQQRMELLEVNKQWDQHFRSMKQQYEQKITE
LRQKLVDLQKQVTELEAEREQKQRDFDRKLLLAKSKIEMEETDKEQLTAEAKELRQKVRYLQDQLSPLTR
QREYQEKEIQRLNKALEEALSIQASPSSPPAAFGSPEGVGGHLRKQELVTQNELLKQQVKIFEEDFQRER
SDRERMNEEKEELKKQVEKLQAQVTLTNAQLKTLKEEEKAKEALKQQKRKAKASGERYHMEPHPEHVCGA
YPYAYPPMPAMVPHHAYKDWSQIRYPPPPVPMEHPPPHPNSRLFHLPEYTWRPPCAGIRNQSSQVMDPPP
DRPAEPESADNDCDGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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