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Report for CCDS24461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24461.1 Public Mus musculus 11 Lgalsl 23 108 98 CCDS HistoryNCBI Gene:216551Re-query CCDS DB by CCDS ID:24461.1Re-query CCDS DB by GeneID:216551See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047028.8 ENSMUSP00000044342.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047028.8Link to Ensembl Protein Viewer:ENSMUSP00000044342.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047028Re-query CCDS DB by Protein ID:ENSMUSP00000044342
Original member Current member NCBI NM_173752.4 NP_776113.1 Accepted alive Link to Nucleotide Sequence:NM_173752.4Link to Protein Sequence:NP_776113.1Re-query CCDS DB by Nucleotide ID:NM_173752Re-query CCDS DB by Protein ID:NP_776113Link to BLAST:NP_776113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776113.1 172 Q8VED9 172 100% 0 0

Chromosomal Locations for CCDS 24461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20826372 20826515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20829269 20829446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20830038 20830126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20830276 20830347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20830974 20831009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCGGGGTCGGTGGCCGACAGCGACGCCGTGGTGAAACTTGATGATGGGCACTTAAACAACTCCTTGG
GTTCTCCAGTTCAAGCCGACGTGTACTTCCCACGACTGATAGTTCCATTTTGTGGGCACATTAAAGGTGG
CATGAGACCAGGCAAGAAGGTATTAGTGATGGGCATCGTAGATCTCAACCCCGAAAGCTTTGCCATCAGC
TTGACCTGTGGAGACTCTGAAGATCCTCCTGCCGATGTGGCAATTGAACTCAAAGCTGTGTTCACAGACC
GGCAGCTGCTCAGAAACTCTTGTATCTCAGGAGAAAGAGGCGAGGAGCAGTCGGCAATCCCTTACTTTCC
ATTCATCCCAGACCAGCCGTTCAGGGTGGAGATTCTTTGCGAGCACCCACGTTTCAGAGTGTTTGTGGAT
GGACACCAACTTTTTGATTTTTATCACCGTATTCAAACATTATCTGCAATTGACACCATAAAGATCAATG
GGGACCTCCAGATCACCAAACTTGGCTGA

Translation (172 aa):
MAGSVADSDAVVKLDDGHLNNSLGSPVQADVYFPRLIVPFCGHIKGGMRPGKKVLVMGIVDLNPESFAIS
LTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGERGEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVD
GHQLFDFYHRIQTLSAIDTIKINGDLQITKLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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