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Report for CCDS23659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23659.1 Public Mus musculus 9 Lars2 23 108 98 CCDS HistoryNCBI Gene:102436Re-query CCDS DB by CCDS ID:23659.1Re-query CCDS DB by GeneID:102436See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038863.8 ENSMUSP00000036710.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038863.8Link to Ensembl Protein Viewer:ENSMUSP00000036710.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038863Re-query CCDS DB by Protein ID:ENSMUSP00000036710
Original member NCBI NM_001348167.1 NP_001335096.1 Updated not alive Link to Nucleotide Sequence:NM_001348167.1Link to Protein Sequence:NP_001335096.1Re-query CCDS DB by Nucleotide ID:NM_001348167Re-query CCDS DB by Protein ID:NP_001335096
Current member NCBI NM_001348167.2 NP_001335096.1 Accepted alive Link to Nucleotide Sequence:NM_001348167.2Link to Protein Sequence:NP_001335096.1Re-query CCDS DB by Nucleotide ID:NM_001348167Re-query CCDS DB by Protein ID:NP_001335096Link to BLAST:NP_001335096.1
Original member NCBI NM_153168.3 NP_694808.1 Updated not alive Link to Nucleotide Sequence:NM_153168.3Link to Protein Sequence:NP_694808.1Re-query CCDS DB by Nucleotide ID:NM_153168Re-query CCDS DB by Protein ID:NP_694808
Current member NCBI NM_153168.4 NP_694808.1 Accepted alive Link to Nucleotide Sequence:NM_153168.4Link to Protein Sequence:NP_694808.1Re-query CCDS DB by Nucleotide ID:NM_153168Re-query CCDS DB by Protein ID:NP_694808Link to BLAST:NP_694808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335096.1 902 Q8VDC0 902 100% 0 0
NP_694808.1 902 Q8VDC0 902 100% 0 0

Chromosomal Locations for CCDS 23659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123371873 123372103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123377701 123377829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123392783 123392874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123394951 123395011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123409614 123409703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123411873 123412016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123418179 123418286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123418635 123418794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123427447 123427551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123431886 123432001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123436117 123436400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123438135 123438233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123441464 123441601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123452745 123452845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123453211 123453393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123454710 123454879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123454960 123455037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123455893 123456004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123459492 123459619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123461499 123461678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2709 nt):
ATGGCATCCACTTGTCAGAGGCTGAGTTTCTATGTCTCTCCTCTGAAAAGGCAGCTAGTTAGCAGGCCAC
CTGTCATCCTGTGGGAAAGACTAATTCCAGGGTGTTCCAGAAGTATCTACAGTGCCACCGGGAAGTGGAC
AAAGGAGTACACACTGCAGACAAGGAAGGATGTGGAGAAGTGGTGGCACCAACAGATAAAGGAGCAAGCG
TCCAGAGTCTCAGAGGAAGATAAATTAAAGCCCAAATTCTACTTGCTCTCCATGTTCCCATACCCTTCTG
GCAAGCTGCACATGGGCCATGTCCGTGTCTACACCCTCAGCGACACCATTGCACGGTTCCAGAAAATGAG
AGGCATGCAGGTTATCAACCCCATGGGGTGGGATGCATTTGGATTGCCTGCTGAAAATGCTGCCATAGAG
AGGAATTTGCACCCTGAAAGCTGGACCCAAAGCAATATTAAACACATGAGGAAGCAGCTCGACCGCCTCG
GCCTGTGCTTCAGCTGGGACAGGGAAATCACTACATGTTTGCCAGATTACTACAAATGGACTCAATACCT
GTTTATCAAACTCTATGAAGCAGGACTGGCCTATCAAAAGGAGGCCTTGGTTAACTGGGATCCAGTGGAT
CAAACAGTGCTAGCCAATGAGCAGGTGAATGAATATGGCTGTTCATGGCGTTCTGGAGCCAAGGTAGAGA
AGAAATACCTCCGACAGTGGTTCATTAAGACAACTGCTTATGCAAAGGCCATGCAGGATGCGTTGGCAGA
CCTCCCAGAGTGGTACGGAATCAAAGGCATGCAGGCCCACTGGATTGGGGACTGTGTAGGCTGTCACCTG
GACTTCACATTAAAGGTTGATGGAGAAGACACAGGAGAGAAATTGACAGCATACACAGCCACCCCTGAGG
CCATCTATGGCATCTCCCACGTGGCCATCTCTCCTAGCCACGGGCTTCTACATGGCTGCAGCTCTGTGAA
GAAAGCCTTGCAGAAGGCACTAGTCCCTGGCAGAGATTGCCTCACACCAGTGATGGCTGTGAGCATGCTC
ACCCTGCAGGAGGTCCCCATCGTTATCATGGCTAACCCTGACTTGGAAGGCTCTCTAGATTCAAAAATAG
GAATCCCCAGCACCAGCTCAGAGGACACCAGACTGGCCCAAGCTCTGGGCCTACCCTACTCTGAGGTCAT
TGAAGCTTCACCCGATGGCACAGAGAGACTGAGTGGATCTGCTGAGTTTACAGGTATGACCAGGCAGGAT
GCCTTTGTAGCCCTGACTCGGAAAGCCCGTGGGATGAGAGTGGGTGGACACGTGACAAGTAACAAGCTGA
AGGACTGGCTGATCTCACGGCAGCGCTACTGGGGCACACCGATCCCCATTGTCCACTGCCCAGCCTGTGG
CCCTGTGCCTGTGCCACTGCAAGACTTGCCTGTGATTTTGCCCAGCATTGCATCTTTAACGGGCAGAGGA
GGCTCCCCGCTGGCCACGGCTTTGGAGTGGGTGAACTGCTCCTGCCCAAGGTGCAAGGGATCAGCAAAGA
GAGAGACGGACACCATGGACACCTTTGTGGATTCTGCGTGGTACTACTTCAGATACACTGACCCTCATAA
TACTCAAAGTCCTTTTGGCTCGGCACTGGCAGACTTCTGGATGCCCGTGGATCTGTACATCGGAGGAAAG
GAACATGCTGTCATGCACTTGTTCTATGCACGATTCCTCAGTCATTTTTGCCACGACCAAAAGATGGTGA
AGCACAGGGAACCTTTCCATAAACTACTGGCCCAAGGCCTCATTAAGGGACAGACATTCCGCCTTCCATC
TGGACAGTGTCTGAAGAAGGAGGATATAGATTTCACAGGTCCTGCTCCTGTTTGTGCAAAAACAAAAGAG
AAGTTAGAGGTGACGTGGGAGAAGATGAGCAAGTCCAAACACAATGGGGTGGACCCTGAGGAGATTGTGG
CCCAATATGGAATTGACACAATCCGGCTCTACATCCTCTTTGCAGCCCCTCCTGAGAAGGACATCTTGTG
GGATGTAAAGACTGACGCACTCCCTGGAGTGCTAAGATGGCAACAGCGGTTGTGGTCCCTGACAACAAGA
TTCATCGAGGCAAGGACTTCCGGGACAGTCCCTCAGCCTCAGCTGCTGAACAGCAAGGAGAAAACCAAGG
CCCAAAACCTCTGGGAGTACAAAAATGCAGTCATAGCTCAGGTGACCACTCATTTCACAGAGGACTTTGC
CCTGAATTCTGTAGTTTCTCAGCTGATGGGACTCAGCAGTGCCCTCTCGCAAGCCTCTCAGAGAGTGGTT
CTCCACAGCCCTGAGTTTGAAGATGCTCTGTGTGCCCTGCTGGTGATGGCTGCTCCCCTGGCCCCTCATG
TAACCTCAGAACTTTGGGCAGGCCTGACGCTGGTACCAAGCAAGCTCTGTGACCATTATGCCTGGGATTC
TGGTGTGATGCTTCAGGCCTGGCCCACTGTGGACTCACAGTTCCTTCAGAAACCTGACATGGTGCAGATG
GCTGTTCTGATCAACAACAAGGCCTGTGGCAAGATCCCTGTGCCCCAGCATGTTGCCCAGGACCAGGACA
AAGTCCATGAACTTGTTCTCCAGAGCGAGCTAGGCATGAAGCTGCTGCAGGGGAGAAGCATCAAGAAGGC
CTTCCTCTCCCCCAGGACTGCCCTCATCAACTTCTTGGTGCAGGAGTGA

Translation (902 aa):
MASTCQRLSFYVSPLKRQLVSRPPVILWERLIPGCSRSIYSATGKWTKEYTLQTRKDVEKWWHQQIKEQA
SRVSEEDKLKPKFYLLSMFPYPSGKLHMGHVRVYTLSDTIARFQKMRGMQVINPMGWDAFGLPAENAAIE
RNLHPESWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGLAYQKEALVNWDPVD
QTVLANEQVNEYGCSWRSGAKVEKKYLRQWFIKTTAYAKAMQDALADLPEWYGIKGMQAHWIGDCVGCHL
DFTLKVDGEDTGEKLTAYTATPEAIYGISHVAISPSHGLLHGCSSVKKALQKALVPGRDCLTPVMAVSML
TLQEVPIVIMANPDLEGSLDSKIGIPSTSSEDTRLAQALGLPYSEVIEASPDGTERLSGSAEFTGMTRQD
AFVALTRKARGMRVGGHVTSNKLKDWLISRQRYWGTPIPIVHCPACGPVPVPLQDLPVILPSIASLTGRG
GSPLATALEWVNCSCPRCKGSAKRETDTMDTFVDSAWYYFRYTDPHNTQSPFGSALADFWMPVDLYIGGK
EHAVMHLFYARFLSHFCHDQKMVKHREPFHKLLAQGLIKGQTFRLPSGQCLKKEDIDFTGPAPVCAKTKE
KLEVTWEKMSKSKHNGVDPEEIVAQYGIDTIRLYILFAAPPEKDILWDVKTDALPGVLRWQQRLWSLTTR
FIEARTSGTVPQPQLLNSKEKTKAQNLWEYKNAVIAQVTTHFTEDFALNSVVSQLMGLSSALSQASQRVV
LHSPEFEDALCALLVMAAPLAPHVTSELWAGLTLVPSKLCDHYAWDSGVMLQAWPTVDSQFLQKPDMVQM
AVLINNKACGKIPVPQHVAQDQDKVHELVLQSELGMKLLQGRSIKKAFLSPRTALINFLVQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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