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Report for CCDS23246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23246.1 Public Mus musculus 9 Neo1 23 108 98 CCDS HistoryNCBI Gene:18007Re-query CCDS DB by CCDS ID:23246.1Re-query CCDS DB by GeneID:18007See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068664.6 ENSMUSP00000063656.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068664.6Link to Ensembl Protein Viewer:ENSMUSP00000063656.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068664Re-query CCDS DB by Protein ID:ENSMUSP00000063656
Original member NCBI NM_008684.2 NP_032710.2 Updated not alive Link to Nucleotide Sequence:NM_008684.2Link to Protein Sequence:NP_032710.2Re-query CCDS DB by Nucleotide ID:NM_008684Re-query CCDS DB by Protein ID:NP_032710
Current member NCBI NM_008684.3 NP_032710.2 Accepted alive Link to Nucleotide Sequence:NM_008684.3Link to Protein Sequence:NP_032710.2Re-query CCDS DB by Nucleotide ID:NM_008684Re-query CCDS DB by Protein ID:NP_032710Link to BLAST:NP_032710.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032710.2 1492 P97798-1 1492 100% 0 0

Chromosomal Locations for CCDS 23246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58877274 58877357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58878028 58878164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58880592 58880855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58884470 58884628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58888401 58888493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58888982 58889220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58893875 58894022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58899165 58899233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58902083 58902115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58902914 58903108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58904444 58904551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58906650 58906788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58906871 58907094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58908404 58908499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58913148 58913342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58914254 58914364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58916959 58917106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58918607 58918656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58921162 58921300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58921767 58921915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58925762 58925916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58930956 58931175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58955959 58956079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58957898 58958052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58978625 58978761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58982076 58982229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58985601 58985876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58990191 58990508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59035966 59036128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4479 nt):
ATGGCGGCGGAGCGCGAAGCCGGGCGACTCCTCTGCACCTCCTCCTCCCGGCGCTGCTGTCCGCCACCGC
CGCTGCTGCTGTTGCTGCCGCTGCTGCTGCTGCTCGGACGCCCGGCGTCCGGCGCCGCGGCCACGAAGAG
CGGCTCCCCGCCGCAGTCCGCAGGAGCCAGTGTTCGAACATTCACTCCGTTTTATTTTCTGGTGGAGCCA
GTAGACACCCTCTCAGTTAGAGGCTCTTCTGTTATATTAAATTGCTCGGCATATTCTGAGCCCTCTCCAA
ACATTGAATGGAAGAAAGATGGGACTTTTTTAAACTTAGAATCAGATGATCGACGCCAGCTACTCCCAGA
TGGATCTTTATTCATCAGCAACGTGGTGCATTCCAAACACAATAAGCCTGACGAAGGTTTCTATCAGTGT
GTAGCCACTGTGGATAATCTTGGAACCATTGTCAGCAGAACAGCCAAGCTCACAGTAGCAGGTCTTCCAA
GATTTACCAGCCAACCAGAACCTTCTTCAGTCTATGTTGGAAACAGTGCAATTCTGAATTGTGAAGTTAA
TGCAGATTTGGTCCCATTTGTTAGGTGGGAACAGAATCGACAGCCCCTTCTTCTAGATGACAGGATTGTC
AAACTTCCAAGTGGAACACTGGTTATCAGCAATGCTACTGAAGGAGATGGGGGACTCTACCGCTGCATTG
TTGAAAGTGGTGGGCCACCAAAGTTTAGTGACGAAGCTGAATTGAAAGTTCTTCAAGATCCTGAGGAAAT
TGTAGACTTGGTATTTCTGATGCGACCATCTTCTATGATGAAAGTCACTGGTCAGAGTGCAGTGTTGCCA
TGTGTTGTCTCAGGGCTTCCTGCTCCAGTTGTTAGATGGATGAAAAACGAAGAAGTGCTTGACACAGAAA
GCTCTGGCAGGTTGGTCTTGCTAGCAGGAGGTTGCTTGGAGATCAGTGATGTCACTGAGGATGATGCTGG
GACTTATTTTTGCATAGCTGATAATGGAAATAAGACAGTTGAAGCTCAGGCGGAGCTTACTGTGCAAGTG
CCACCTGGATTCCTGAAACAACCTGCTAACATATATGCTCACGAATCCATGGACATTGTATTTGAATGTG
AAGTCACTGGGAAGCCAACTCCAACTGTGAAGTGGGTCAAGAATGGGGATGTGGTTATCCCCAGTGATTA
CTTTAAAATTGTAAAGGAACATAATCTTCAAGTTTTGGGTCTGGTGAAATCAGATGAAGGGTTCTATCAA
TGCATTGCTGAGAATGATGTTGGAAATGCACAAGCTGGAGCCCAGCTGATAATCCTTGAGCATGATGTTG
CCATCCCAACATTACCTCCCACTTCACTGACCAGTGCCACTACTGACCATCTAGCACCAGCCACAACGGG
ACCATTACCTTCAGCTCCTCGAGACGTCGTGGCCTCCCTGGTCTCTACTCGCTTCATTAAATTGACATGG
CGTACACCTGCATCAGACCCTCATGGAGACAATCTCACCTACTCTGTGTTCTACACCAAGGAAGGGGTTG
CTAGGGAGCGTGTTGAGAATACCAGCCAGCCAGGAGAGATGCAGGTGACTATTCAAAACTTGATGCCAGC
AACTGTGTACATCTTCAAAGTTATGGCTCAAAATAAGCATGGCTCTGGAGAAAGTTCAGCTCCTCTTCGA
GTAGAGACACAGCCTGAGGTTCAGCTCCCTGGCCCAGCACCTAATATCCGTGCTTATGCAACGTCACCTA
CTTCTATCACTGTCACCTGGGAAACACCGTTATCTGGCAATGGGGAAATTCAAAATTACAAATTGTACTA
CATGGAAAAAGGAACTGATAAAGAACAGGATATTGATGTTTCAAGTCACTCCTACACCATTAATGGACTG
AAGAAATACACAGAATACAGTTTCCGAGTGGTGGCCTACAATAAACATGGTCCTGGAGTTTCTACACAAG
ATGTTGCTGTTCGAACATTATCAGATGTTCCCAGTGCTGCTCCTCAGAATCTGTCCTTAGAAGTGAGAAA
TTCAAAGAGTATAGTGATCCACTGGCAGCCCCCTTCCTCAACCACACAAAATGGGCAGATAACTGGCTAC
AAGATTCGATATCGAAAGGCCTCCCGAAAAAGTGATGTCACTGAGACCTTGGTAACTGGGACACAGCTGT
CTCAGCTGATTGAAGGTCTTGATCGGGGGACAGAATATAACTTCCGAGTCGCTGCTCTCACAGTCAATGG
TACAGGTCCAGCAACTGATTGGCTGTCTGCTGAAACTTTTGAAAGCGACCTAGATGAAACTCGTGTTCCT
GAAGTGCCCAGCTCTCTTCATGTCCGTCCGCTCGTCACTAGCATTGTAGTGAGCTGGACTCCTCCAGAGA
ACCAGAACATTGTGGTCCGAGGTTATGCCATCGGTTACGGCATTGGCAGCCCTCATGCCCAGACCATCAA
AGTGGACTATAAACAACGTTATTACACCATCGAAAACTTGGATCCAAGCTCTCATTACGTGATTACCTTG
AAAGCATTTAACAATGTTGGCGAAGGCATCCCCCTTTATGAGAGTGCTGTGACCAGACCTCACACAGACA
CTTCTGAAGTTGATTTATTTGTTATTAATGCTCCATACACTCCAGTGCCAGATCCCACTCCCATGATGCC
ACCAGTGGGAGTTCAGGCTTCCATTCTGAGTCACGACACCATAAGGATTACCTGGGCAGACAACTCCCTG
CCCAAACACCAGAAGATTACAGACTCCCGCTACTACACAGTCCGGTGGAAGACCAACATCCCAGCAAACA
CGAAGTACAAGAATGCAAATGCAACGACGTTAAGCTATTTGGTTACTGGTTTAAAGCCAAATACGCTCTA
TGAGTTCTCTGTGATGGTGACCAAAGGCAGAAGGTCAAGCACGTGGAGTATGACAGCTCATGGCGCTACC
TTTGAATTAGTTCCTACTTCTCCACCTAAGGATGTGACAGTTGTGAGTAAGGAAGGAAAACCTAGAACCA
TCATAGTGAATTGGCAGCCTCCCTCTGAAGCTAACGGCAAGATTACAGGTTACATCATCTATTACAGCAC
GGATGTGAATGCAGAGATACATGACTGGGTTATTGAACCAGTTGTGGGAAACAGACTGACTCACCAGATT
CAAGAGTTAACACTTGATACGCCATACTACTTCAAAATCCAGGCCCGGAACTCAAAGGGCATGGGGCCCA
TGTCTGAAGCTGTACAGTTCAGAACACCTAAAGCGGACTCCTCTGATAAAATGCCTAATGACCAAGCCTT
AGGGTCAGCAGGAAAAGGAAGCCGACTACCAGACCTGGGATCTGACTACAAACCTCCAATGAGTGGCAGC
AACAGCCCTCACGGGAGCCCCACCTCCCCTCTGGACAGCAACATGCTGCTGGTCATCATTGTCTCTGTTG
GCGTCATCACTATCGTGGTGGTTGTGGTCATTGCTGTCTTTTGTACCCGGCGCACCACCTCTCACCAGAA
GAAGAAACGAGCTGCGTGCAAATCAGTGAATGGCTCCCATAAGTACAAGGGCAATTGCAAAGATGTGAAG
CCTCCAGACCTATGGATCCATCACGAGAGACTAGAGTTGAAGCCTATTGACAAGTCTCCAGATCCTAACC
CTGTCATGACTGATACTCCAATCCCTCGAAACTCTCAAGATATCACACCAGTGGACAATTCCATGGATAG
CAATATCCATCAAAGGCGGAATTCATACAGAGGGCATGAGTCAGAGGACAGCATGTCTACACTGGCTGGA
AGGAGGGGAATGAGACCAAAAATGATGATGCCCTTTGACTCTCAGCCACCTCAGCCTGTGATTAGTGCCC
ATCCCATCCATTCCCTCGATAACCCTCACCATCATTTCCACTCCAGCAGCCTCGCTTCTCCAGCCCGCAG
TCATCTCTACCACCCAAGCAGCCCATGGCCCATTGGCACATCCATGTCCCTTTCAGACAGGGCCAATTCC
ACAGAATCTGTTCGAAATACCCCCAGCACGGACACCATGCCAGCGTCCTCGTCTCAGACGTGCTGCACTG
ACCATCAGGACCCTGAGGGTGCTACTAGCTCCTCTTACTTGGCCAGCTCCCAAGAGGAAGACTCAGGCCA
GAGTCTTCCCACAGCCCATGTCCGCCCTTCCCACCCTCTGAAGAGCTTCGCTGTGCCAGCAATCCCACCC
CCAGGACCTCCTCTCTATGATCCTGCACTGCCAAGCACACCATTACTGTCCCAGCAAGCTCTGAACCATC
ACATTCACTCAGTGAAAACAGCCTCCATCGGGACGTTAGGAAGGAGCCGGCCTCCTATGCCAGTGGTTGT
TCCGAGTGCCCCTGAAGTACAGGAGACCACCAGGATGCTGGAAGACTCCGAGAGTAGCTATGAACCAGAT
GAGCTGACCAAAGAGATGGCCCACCTGGAAGGACTAATGAAGGACCTAAATGCCATCACAACAGCCTGA

Translation (1492 aa):
MAAEREAGRLLCTSSSRRCCPPPPLLLLLPLLLLLGRPASGAAATKSGSPPQSAGASVRTFTPFYFLVEP
VDTLSVRGSSVILNCSAYSEPSPNIEWKKDGTFLNLESDDRRQLLPDGSLFISNVVHSKHNKPDEGFYQC
VATVDNLGTIVSRTAKLTVAGLPRFTSQPEPSSVYVGNSAILNCEVNADLVPFVRWEQNRQPLLLDDRIV
KLPSGTLVISNATEGDGGLYRCIVESGGPPKFSDEAELKVLQDPEEIVDLVFLMRPSSMMKVTGQSAVLP
CVVSGLPAPVVRWMKNEEVLDTESSGRLVLLAGGCLEISDVTEDDAGTYFCIADNGNKTVEAQAELTVQV
PPGFLKQPANIYAHESMDIVFECEVTGKPTPTVKWVKNGDVVIPSDYFKIVKEHNLQVLGLVKSDEGFYQ
CIAENDVGNAQAGAQLIILEHDVAIPTLPPTSLTSATTDHLAPATTGPLPSAPRDVVASLVSTRFIKLTW
RTPASDPHGDNLTYSVFYTKEGVARERVENTSQPGEMQVTIQNLMPATVYIFKVMAQNKHGSGESSAPLR
VETQPEVQLPGPAPNIRAYATSPTSITVTWETPLSGNGEIQNYKLYYMEKGTDKEQDIDVSSHSYTINGL
KKYTEYSFRVVAYNKHGPGVSTQDVAVRTLSDVPSAAPQNLSLEVRNSKSIVIHWQPPSSTTQNGQITGY
KIRYRKASRKSDVTETLVTGTQLSQLIEGLDRGTEYNFRVAALTVNGTGPATDWLSAETFESDLDETRVP
EVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITL
KAFNNVGEGIPLYESAVTRPHTDTSEVDLFVINAPYTPVPDPTPMMPPVGVQASILSHDTIRITWADNSL
PKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGAT
FELVPTSPPKDVTVVSKEGKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQI
QELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKADSSDKMPNDQALGSAGKGSRLPDLGSDYKPPMSGS
NSPHGSPTSPLDSNMLLVIIVSVGVITIVVVVVIAVFCTRRTTSHQKKKRAACKSVNGSHKYKGNCKDVK
PPDLWIHHERLELKPIDKSPDPNPVMTDTPIPRNSQDITPVDNSMDSNIHQRRNSYRGHESEDSMSTLAG
RRGMRPKMMMPFDSQPPQPVISAHPIHSLDNPHHHFHSSSLASPARSHLYHPSSPWPIGTSMSLSDRANS
TESVRNTPSTDTMPASSSQTCCTDHQDPEGATSSSYLASSQEEDSGQSLPTAHVRPSHPLKSFAVPAIPP
PGPPLYDPALPSTPLLSQQALNHHIHSVKTASIGTLGRSRPPMPVVVPSAPEVQETTRMLEDSESSYEPD
ELTKEMAHLEGLMKDLNAITTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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