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Report for CCDS23097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23097.1 Public Mus musculus 9 Mcam 23 108 98 CCDS HistoryNCBI Gene:84004Re-query CCDS DB by CCDS ID:23097.1Re-query CCDS DB by GeneID:84004See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034650.14 ENSMUSP00000034650.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034650.14Link to Ensembl Protein Viewer:ENSMUSP00000034650.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034650Re-query CCDS DB by Protein ID:ENSMUSP00000034650
Original member NCBI NM_023061.2 NP_075548.2 Updated not alive Link to Nucleotide Sequence:NM_023061.2Link to Protein Sequence:NP_075548.2Re-query CCDS DB by Nucleotide ID:NM_023061Re-query CCDS DB by Protein ID:NP_075548
Current member NCBI NM_023061.3 NP_075548.2 Accepted alive Link to Nucleotide Sequence:NM_023061.3Link to Protein Sequence:NP_075548.2Re-query CCDS DB by Nucleotide ID:NM_023061Re-query CCDS DB by Protein ID:NP_075548Link to BLAST:NP_075548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075548.2 648 Q8R2Y2-1 648 100% 0 0

Chromosomal Locations for CCDS 23097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44134690 44134756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44136518 44136648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44136738 44136945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44137039 44137109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44137218 44137305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44138835 44139014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44139158 44139279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44139400 44139562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44139653 44139771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44139860 44140001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44140137 44140258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44140362 44140503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44140598 44140693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44140845 44140992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44141275 44141392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44141784 44141813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGGGCTGCCCAAACTGGTGTGCGTCTTCTTGTTCGCTGCCTGCTGCTGCTGTCGCCGTGCCGCGGGTG
TGCCAGGAGAGGAAAAGCAGCCAGTACCCACGCCCGACCTGGTGGAGGCAGAAGTGGGCAGCACAGCCCT
TCTCAAGTGTGGCCCCTCACGGGCCTCAGGCAACTTCAGCCAAGTGGACTGGTTTTTGATTCACAAGGAG
AGGCAGATACTGATTTTCCGTGTGCACCAAGGCAAGGGCCAGCGGGAACCTGGTGAATATGAGCACCGCC
TTAGCCTCCAAGACTCGGTGGCTACTCTGGCCCTGAGTCACGTCACTCCCCATGATGAGCGAATGTTCCT
GTGTAAGAGCAAGCGACCACGGCTCCAGGATCACTACGTTGAGCTTCAGGTCTTCAAAGCCCCAGAGGAA
CCAACTATTCAAGCCAATGTCGTGGGCATCCATGTGGACAGGCAAGAGCTCAGGGAGGTTGCTACCTGTG
TGGGGAGAAACGGCTACCCCATTCCTCAAGTCCTATGGTACAAGAACAGTCTGCCCTTGCAAGAGGAGGA
GAACCGAGTTCATATCCAGTCATCACAGATTGTCGAGTCCAGTGGCTTGTACACCTTGAAGAGTGTTCTG
AGTGCACGCCTAGTTAAGGAAGACAAAGATGCCCAGTTTTACTGTGAACTCAGCTACCGGCTACCCAGTG
GGAACCACATGAAGGAATCTAAGGAGGTCACTGTCCCTGTTTTCTACCCTGCAGAAAAAGTGTGGGTGGA
GGTAGAGCCTGTGGGGCTGCTGAAGGAAGGGGATCATGTGACAATCAGGTGTCTGACAGATGGCAACCCT
CAACCCCACTTCACTATCAACAAGAAGGACCCCAGCACTGGGGAGATGGAAGAGGAGAGCACCGATGAAA
ATGGGCTCCTGTCCTTGGAGCCTGCCGAAAAGCACCATAGCGGGCTCTACCAGTGTCAGAGTCTGGACCT
GGAAACTACCATCACACTGTCAAGTGACCCCCTGGAGCTGCTGGTGAACTATGTGTCTGATGTTCAAGTG
AATCCAACTGCCCCTGAAGTCCAGGAAGGTGAGAGCCTCACGCTGACCTGCGAGGCAGAAAGTAACCAGG
ACCTTGAGTTTGAGTGGCTGAGAGACAAGACAGGCCAGCTGCTGGGAAAGGGTCCCGTCCTCCAGCTAAA
CAACGTGAGACGGGAAGCAGGGGGACGGTATCTCTGCATGGCATCTGTCCCCAGAGTTCCTGGCTTGAAT
CGTACCCAGCTGGTCAGCGTGGGCATTTTTGGGTCCCCATGGATGGCATTAAAGGAGAGGAAGGTGTGGG
TGCAAGAGAATGCAGTGCTGAATCTGTCTTGTGAGGCTTCAGGACATCCTCAGCCCACCATCTCCTGGAA
TGTCAATGGTTCGGCAACTGAATGGAACCCAGATCCACAGACAGTAGTGAGCACCTTGAATGTCCTTGTG
ACGCCAGAGCTTCTGGAGACAGGTGCAGAGTGTACAGCCTCCAACTCCCTGGGCTCAAACACCACCACCA
TTGTTCTGAAGCTGGTCACTTTAACCACCCTCATACCTGACTCCAGCCAAACCACTGGCCTCAGCACCCT
CACAGTCAGTCCTCACACCAGAGCCAACAGCACCTCCACAGAGAAAAAGCTGCCACAGCCAGAGAGCAAA
GGTGTGGTCATCGTGGCTGTGATAGTGTGTACCTTGGTGCTTGCTGTGCTGGGTGCTGCTCTCTATTTCT
TCTACAAGAAGGGCAAGCTGCCATGTGGACGCTCGGGAAAACAGGAGATCACGCTGCCCCCGACTCGTAA
GAGTGAATTTGTAGTTGAAGTTAAGTCAGATAAGCTCCCAGAAGAGATGGCTCTCCTTCAGGGCAGCAAC
GGTGACAAGAGGGCTCCAGGAGACCAGGGAGAGAAATACATCGATCTGAGGCATTAG

Translation (648 aa):
MGLPKLVCVFLFAACCCCRRAAGVPGEEKQPVPTPDLVEAEVGSTALLKCGPSRASGNFSQVDWFLIHKE
RQILIFRVHQGKGQREPGEYEHRLSLQDSVATLALSHVTPHDERMFLCKSKRPRLQDHYVELQVFKAPEE
PTIQANVVGIHVDRQELREVATCVGRNGYPIPQVLWYKNSLPLQEEENRVHIQSSQIVESSGLYTLKSVL
SARLVKEDKDAQFYCELSYRLPSGNHMKESKEVTVPVFYPAEKVWVEVEPVGLLKEGDHVTIRCLTDGNP
QPHFTINKKDPSTGEMEEESTDENGLLSLEPAEKHHSGLYQCQSLDLETTITLSSDPLELLVNYVSDVQV
NPTAPEVQEGESLTLTCEAESNQDLEFEWLRDKTGQLLGKGPVLQLNNVRREAGGRYLCMASVPRVPGLN
RTQLVSVGIFGSPWMALKERKVWVQENAVLNLSCEASGHPQPTISWNVNGSATEWNPDPQTVVSTLNVLV
TPELLETGAECTASNSLGSNTTTIVLKLVTLTTLIPDSSQTTGLSTLTVSPHTRANSTSTEKKLPQPESK
GVVIVAVIVCTLVLAVLGAALYFFYKKGKLPCGRSGKQEITLPPTRKSEFVVEVKSDKLPEEMALLQGSN
GDKRAPGDQGEKYIDLRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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